Skip to main content
. 2012 Apr 26;6(10):1916–1925. doi: 10.1038/ismej.2012.38

Table 1. Bacterial strains, plasmids and transposon used in this study.

Strain, plasmid or transposon Genotype or characteristic(s) Source or reference
Strains
 E. coli EPI300 F- mcrA Δ(mrr-hsdRMS-mcrBC) Φ80dlacZΔM15 ΔlacX74 recA1 endA1 araD139 Δ(ara, leu)7697 galU galK λ- rpsL nupG trfA dhfr; high-transformation efficiency of large DNA Epicentre Biotechnologies
 E. coli MKH13 MC4100Δ(putPA)101D(proP)2D(proU) (Haardt et al., 1995)
 E. coli MKH13∷pCI372-murB(3) MKH13 containing pCI372 with murB gene from SMG 3 (similar to Collinsella aerofaciens ATCC 25986) This study
 E. coli MKH13∷pCI372-mazG(3) MKH13 containing pCI372 with mazG gene from SMG 3 (similar to Collinsella aerofaciens ATCC 25986) This study
 E. coli MKH13∷pCI372-galE(3) MKH13 containing pCI372 with galE gene from SMG 3 (similar to Collinsella aerofaciens ATCC 25986) This study
 E. coli MKH13∷pCI372-mazG(5) MKH13 containing pCI372 with mazG gene from SMG 5 (similar to Eggerthella sp. YY7918 This study
 E. coli MKH13∷pCI372-galE(25) MKH13 containing pCI372 with galE gene from SMG 25 (similar to Akkermansia muciniphila ATCC BAA-835) This study
     
Plasmids
pCI372 Shuttle vector between E. coli and L. lactis, CmR (Hayes et al., 1990)
     
pCC1FOS Fosmid cloning vector, CmR Epicentre Biotechnologies
     
Transposon
EZ-Tn5 <oriV/ KAN-2> Hyperactive Tn5 transposon, KanR, inducible high copy origin of replication—oriV Epicentre Biotechnologies
HHS Vulnerability Disclosure