Table 2.
Transcripts of B. azoricus gill bacterial community involved in key metabolisms.
| Metabolism/Pathway | Function | Hits # | e-Value | Identity (%) | Taxonomic Affiliation |
|---|---|---|---|---|---|
| CO2 fixation | Rubisco activation protein CbbQ | 2 | 1e−23 | 83.00 | Methylococcus capsulatus |
| Ribose 5-phosphate isomerase A (EC 5.3.1.6) | 1 | 1e−50 | 70.07 | Nitrosomonas | |
| Transketolase (EC 2.2.1.1) | 4 | 1e−59 | 74.38 | Methylococcus flagelatus | |
| Transketolase, N-terminal section (EC 2.2.1.1) | 1 | 1e−16 | 61.43 | ||
| Methane oxidation | Methane monooxygenase B-subunit (EC 1.14.13.25) | 1 | 1e−34 | 75.58 | Methylococcus capsulatus |
| Particulate methane monooxygenase C-subunit (EC 1.14.13.25) | 1 | 1e−44 | 85.01 | Methylococcus capsulatus | |
| Denitrification | Nitrous-oxide reductase (EC 1.7.99.6) | 1 | 1e−15 | 65.52 | |
| Nitrate and nitrite ammonification | Nitrite reductase (NAD(P)H) large subunit (EC 1.7.1.4) | 1 | 1e−44 | 66.93 | Burkholderia |
| Respiratory nitrate reductase alpha chain (EC 1.7.99.4) | 1 | 1e−46 | 78.90 | Hallela | |
| Respiratory nitrate reductase beta chain (EC 1.7.99.4) | 3 | 1e−56 | 74.63 | Chromobacterium | |
| Respiratory dehydrogenases | Methanol dehydrogenase large subunit protein (EC 1.1.99.8) | 1 | 1e−55 | 74.80 | Rhodopseudomonas |
| Sulfate reduction-associated complexesSulfur oxidation | Sulfite reductase beta subunit (EC 1.8.99.1) | 1 | 1e−42 | 91.46 | Calyptogena endosymbionts |
| Sulfite dehydrogenase cytochrome subunit SoxD | 3 | 1e−14 | 63.04 | Manganese-oxidizing bacterium (strain SI85-9A1) | |
| Sulfite oxidase | 1 | 1e−26 | 65.38 | Calyptogena endosymbionts | |
| Sulfur oxidation protein SoxB | 1 | 1e−27 | 57.73 | Thiobacillus denitrificans | |
| Sulfur oxidation protein SoxY | 2 | 1e−15 | 76.16 | Calyptogena endosymbionts |
Transcript gene function was assigned in MG-RAST, with the following parameters: maximum e-value of 10−5, minimum of 50% identity cutoff and minimum alignment cutoff of 50. Identity (%) refers to amino acid residues that are identical in the hit and the query.