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. Author manuscript; available in PMC: 2013 Jan 16.
Published in final edited form as: Angew Chem Int Ed Engl. 2011 Nov 11;51(3):647–651. doi: 10.1002/anie.201104147

Table 2.

Primary kinetic isotope effects (KIEs) on 2′ nucleophile (18kNu) and 5′ leaving (18kLg) oxygens, and secondary KIEs on O1P (18kO1P) and O2P (18kO2P) oxygens in aqueous solution for the TS1 and TS2 transition states, along with the most relevant available experimental results for comparison.[[a]]

Reaction TS1
TS2
Expt
18kNu 18/34kLg 18kNu 18/34kLg 18kNu 18/34kLg
Native 1.017 1.006 0.968 1.059 0.981(3)[[b]] 1.034(4)[[b]]
S3′ 1.043[[c]] 1.008[[c]] 0.992[[c]] 1.049[[c]] 1.119(6)[[d]] 1.0118(3)[[d]]
S5′ 1.042[[c]] 1.002[[c]] n.a.[[e]] n.a.[[e]] 1.025(5)[[d]] 1.0009(1)[[d]]
Reaction TS1
TS2
Expt
18kO1P 18kO2P 18kO1P 18kO2P 18kO1P 18kO2P
Native 1.004 1.004 1.005 1.003 0.999(1)[[f]] 0.999(1)[[f]]
S3′ 1.004[[c]] 1.004[[c]] 1.002[[c]] 1.003[[c]] n.d.[[g]] n.d.[[g]]
S5′ 1.004[[c]] 1.004[[c]] n.a.[[e]] n.a.[[e]] n.d.[[g]] n.d.[[g]]
[a]

Temperatures used in calculations are identical to those used in the experiments that are being compared: 37°C for native reactions, and 80°C for thio-substituted reactions. All primary KIE values are computed using the second order Kleinert’s variational perturbation theory with decoupled instantaneous normal coordinate approximation, while the secondary KIE values are computed using the Bigeleisen equation in the decoupled rigid-rotor harmonic-oscillator approximation.[27, 28] Boldface type represents the rate controlling KIE value as determined by comparison with experimental KIE measurements. Experimental errors in the last decimal place are given in parenthesis.

[b]

Extracted from Ref. [12] in which the observed 18kNu has been corrected for deprotonation.

[c]

To be consistent with the experiments in Ref. [13], the KIE values are calculated with the nucleophile O2′ protonated in the reactant state.

[d]

Extracted from Ref. [13], in which the nucleophile O2′ is protonated in the reactant state.

[e]

Not applicable as TS2 cannot be found.

[f]

New experimental data given in this work; values represent an average observed for O1P and O2P positions.

[g]

Not determined yet by experiments.