Table A1.
Closest relatives of the sequenced OTUs.
| Sequence ID (accession number) | Tissue/location | Length (bp) | Similarity (%) | Closest relative in BLAST (accession number) | Description | Author | Family/group in greengens |
|---|---|---|---|---|---|---|---|
| P.o_rhiz_3b (JF292432) | Rhizome/C.Sahona | 494 | 99 | Uncultured bacteria (EU181012) | Isolated from seagull fecal sample | Lu et al., 2008 | Non-Identified Coral BBD isolates/α-proteobacteria |
| 99 | Uncultured bacterium clone (GU118071) | Isolated from the coral Acropora palmata | Sunagawa et al., 2010 | ||||
| 99 | Uncultured bacterium clone (FJ202069) | Isolated from the coral Montastraea faveolata displaying signs of White Plague Disease type II | Sunagawa et al., 2009 | ||||
| 99 | Uncultured bacterium clone (EF123439) | Isolated from Black Band Diseased tissues of the coral Siderastrea siderea | Sekar et al., 2008 | ||||
| 99 | Cohaesibacter sp. (GQ200200) | Rhizobiales; Cohaesibacteraceae. Isolated from sediment of a seawater pond used for sea cucumber culture | Qu et al., 2011 | ||||
| P.o_rhiz_6b (JF292433) | Rhizome/Figueral | 433 | 97 | Uncultured bacteria (EU181012) | Isolated from seagull fecal sample | Lu et al., 2008 | Non-Identified Coral BBD isolates/α-proteobacteria |
| 97 | Uncultured bacterium clone (GU118071) | Isolated from the coral Acropora palmata | Sunagawa et al., 2010 | ||||
| 97 | Uncultured bacterium clone (FJ202069) | Isolated from the coral Montastraea faveolata displaying signs of White Plague Disease type II | Sunagawa et al., 2009 | ||||
| 97 | Uncultured bacterium clone (EF123439) | Isolated from Black Band Diseased tissues of the coral Siderastrea siderea | Sekar et al., 2008 | ||||
| 97 | Cohaesibacter sp. (GQ200200) | Rhizobiales; Cohaesibacteraceae. Isolated from sediment of a seawater pond used for sea cucumber culture | Qu et al., 2011 | ||||
| P.o_rhiz_23b (JF292434) | Rhizome/Talamanca | 518 | 92 | Uncultured δ-proteobacteria (AY133092) | Isolated from TCE-contaminated site | Carrol and Zinder, Unpublished | Desulfovibrionaceae/δ-proteobacteria |
| 92 | Uncultured bacterium clone (GU118736) | Isolated from the coral Montastraea franksi | Sunagawa et al., 2010 | ||||
| 91 | Bacterium enrichment culture clone (HQ622261) | Polluted estuarine sediment | Abed et al., Unpublished | ||||
| 91 | Desulfarculus baarsii (CP002085) | Desulfarculales; Desulfarculaceae; Desulfarculus | Lucas et al., Unpublished | ||||
| P.o_root_15c (JF292435) | Root/C.Marmacen | 471 | 96 | Roseovarius sp. (HQ871860 + HQ871851) | Rhodobacterales; Rhodobacteraceae; Roseovarius | Jeanthon et al., Unpublished | Rhodobacteraceae/α-proteobacteria |
| 96 | Pelagibaca sp. (EU440959) | Rhodobacterales; Rhodobacteraceae; Pelagibaca | Yuan et al., Unpublished | ||||
| 96 | Rhodobacterales bacterium (HQ537377 + HQ537273) | Isolated from 75 m depth on C-MORE BLOOMER cruise, Hawaii Ocean Time Series (HOT) station ALOHA“ | Sher et al., Unpublished | ||||
| 96 | Uncultured Rhodobacterales bacterium (GU474886) | Isolated from Hawaii Oceanographic Time-series study site ALOHA“ | Rich et al., 2011 | ||||
| 96 | Marinovum algicola (FJ752526) | Rhodobacterales; Rhodobacteraceae; Marinovum | Pradella et al., 2010 | ||||
| P.o_root_26c (JF292436) | Root/Magalluf | 520 | 94 | Celerinatantimonas diazotrophica (DQ913889) | Nitrogen Fixing Bacteria isolated from stuarine grasses Spartina alterniflora and Juncus roemerianus | Cramer et al., 2011 | Oceanimonaceae/γ |
| 93 | Celeribacter arcticus gen. nov., sp. nov. (FJ039852) | Alteromonadales. Halophilic denitrifying bacteria isolated from water brine in Siberian permafrost | Shcherbakova et al., Unpublished | ||||
| 92 | Uncultured Agarivorans sp. (DQ647161) | Alteromonadales; Alteromonadaceae; Agarivorans | Dahle et al., 2008 | ||||
| 92 | Agarivorans sp. (GQ200591) | Alteromonadales; Alteromonadaceae; Agarivorans. Isolated from surface of seaweeds | Du et al., 2011 | ||||
| P.o_rhiz_0BDSB (JF292437) | Rhizome/C.Torreta | 391 | 91 | Uncultured bacterium clone (GU946163) | Isolated from agricultural soil | Ros et al., Unpublished | Sphingobacterriaceae/ Bacteroidetes |
| 90 | Pedobacter sp. (AM988948) | Bacteroidetes; Sphingobacteria; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. Isolated from lake water | Berg et al., 2009 | ||||
| 90 | Pedobacter koreensis (DQ092871) | Bacteroidetes; Sphingobacteria; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. Isolated from fresh water | Baik et al., 2007 | ||||
| P.o_rhiz_0BDSD (JF292438) | Rhizome/C.Torreta | 412 | 96 | Uncultured bacterium clone (HM125351) | Isolated from soils | Bissett, Unpublished | Sphingobacteriaceae/ Bacteroidetes |
| 95 | Uncultured bacterium (AM158409) | Isolated from Typha rhizosphere in constructed wetlands | Saenz de Miera et al., Unpublished | ||||
| 95 | Bacterium (FJ654260) | Isolated from soil | Kim et al., Unpublished | ||||
| 95 | Uncultured bacterium clone (GU946163) | Isolated from agricultural soil | Ros et al., Unpublished | ||||
| 95 | Pedobacter sp. (HM204919) | Bacteroidetes; Sphingobacteria; Sphingobacteriales; Sphingobacteriaceae; Pedobacter | Im, Unpublished | ||||
| P.o_rhiz_0BDSG (JF292439) | Rhizome/C.Torreta | 368 | 92 | Unidentified bacterium clone (EF606109) | Isolated from rhizosphere soil from former arable field sown with low seeds diversity | Kielak et al., 2008 | Rhizobiaceae/α-proteobacteria |
| 92 | Uncultured bacterium clone (HM066499) | Isolated from environmental sample | Gray and Engel, Unpublished | ||||
| 92 | Uncultured bacterium clone (AB583099) | Isolated from soybean leaf | Ikeda et al., 2011 | ||||
| 92 | Agrobacetrium tumefaciens (HQ003411) | Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium. Isolated from a lake | Sahay et al., Unpublished | ||||
| 92 | Agrobacetrium tumefaciens (FJ999942) | Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium. Isolated from a plant, endophytic microbiota | Zheng and Feng, Unpublished | ||||
| P.o_rhiz_0BDSJ (JF292440) | Rhizome/Porto Colom | 404 | 97 | Nautella italica (HQ908722) | Rhodobacterales; Rhodobacteraceae; Nautella. Bacteria associated with sponges | Feby and Nair, Unpublished | Rhodobacteraceae/α-proteobacteria |
| 97 | Nautella sp. (HQ188608) | Rhodobacterales; Rhodobacteraceae; Nautella. Isolated from surface seawater | Cho and Hwang, 2011 | ||||
| 95 | Uncultured bacterium clone (GU472165) | Isolated from BBD affected corals | Arotsker et al., Unpublished | ||||
| 97 | Ruegeria sp. (GU176618) | Rhodobacterales; Rhodobacteraceae; Ruegeria. Isolated from surface of the red macroalgae, Delisea pulchra | Case and Kjelleberg, Unpublished | ||||
| 97 | Rhodobacteraceae bacterium (FJ937900) | Rhodobacterales; Rhodobacteraceae. Isolated from Gelliodes carnosa (marine sponge) | Li et al., Unpublished | ||||
| 97 | Uncultured bacterium clone (FJ202604) | Isolated from Montastraea faveolata kept in aquarium for 23 days | Sunagawa et al., 2009 | ||||
| P.o_leaf_0BDVV (JF292441) | Leaf/Pujols | 436 | 80 | Uncultured gamma proteobacterium clone (DQ269096) | Isolated from surface of marine macro-alga Delisea pulchra | Longford et al., Unpublished | Sulfur-Oxidizing-Symbionts/γ-proteobacteria |
| 80 | Uncultured gamma proteobacterium clone (FJ205337) | Isolated from deep marine sediments | Dong and Shao, Unpublished | ||||
| 80 | Uncultured bacterium clone (EU491600 + EU491489 + EU491463) | Isolated from seafloor lavas from the East Pacific Rise | Santelli et al., 2008 | ||||
| 80 | Uncultured gamma proteobacterium (AB611274) | Isolated from abdominal setae of galatheid crab (Shinkaia crosnieri) at the Hatoma Knoll in the Okinawa Trough | Yoshida-Takashima et al., Unpublished | ||||
| 80 | Uncultured gamma proteobacterium clone (AY534017) | Isolated from oxic surface sediments of eastern Mediterranean Sea | Polymenakou et al., 2005 | ||||
| P.o_leaf_0BDVW (JF292442) | Leaf/Pujols | 467 | 95 | Sphingobacteriales bacterium (FJ952766) | Isolated from healthy tissue of coral Montastrea annularis | Rypien et al., 2010 | Flammeovirgaceae/ Bacteroidetes |
| 95 | Flammeovirga aprica (FJ917551) | Isolated from Enteromorpha (Green algae) | Zhang et al., Unpublished | ||||
| 95 | Flammeovirga sp. (EF587968) | Isolated from natural subtidal biofilm | Huang et al., Unpublished | ||||
| 95 | Uncultured bacterium clone (EF433127) | Isolated from Favia sp. mucus layer adjacent to Black Band mat | Barneah et al., 2007 | ||||
| 95 | Flammeovirga sp. (FN377813) | Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Flammeovirga. | Lu, Unpublished | ||||
| Isolated from a marine gastropod mollusk Haliotis diversicolor | |||||||
| P.o_leaf_0BDVX (JF292443) | Leaf/Pujols | 447 | 87 | Flammeovirga aprica (FJ917551) | Isolated from Enteromorpha (Green algae) | Zhang et al., Unpublished | Flammeovirgaceae/ Bacteroidetes |
| 86 | Sphingobacteriales bacterium (FJ952766) | Isolated from healthy tissue of coral Montastrea annularis | Rypien et al., 2010 | ||||
| 86 | Flammeovirga sp. (EF587968) | Isolated from natural subtidal biofilm | Huang et al., Unpublished | ||||
| 86 | Uncultured bacterium clone (EF433134) | Isolated from Favia sp. mucus layer adjacent to Black Band mat | Barneah et al., 2007 | ||||
| 86 | Flammeovirga aprica (FN554611) | Isolated from a marine gastropod mollusk Haliotis diversicolor | Zhao, Unpublished |