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. 2012 Oct;78(20):7290–7298. doi: 10.1128/AEM.01408-12

Table 1.

Salmonella isolates used in this studyi

Isolate name No. of isolates Familya Speciesa Mo Yr State County PFGE type PulseNet matchd No. with matching PFGE patterne No. of matches in yr of isolationf MLVA clusterg MLVA type
22709-5 1 Charadriidae Piping plover August 2009 MA Barnstable B2 No matches
22677-3 1 Laridae Ring-billed gull July 2009 ND Mountrail B1 JPXX01.1261 91 4
22710-1 1 Laridae Ring-billed gull August 2009 ND Foster B1 JPXX01.1261 91 4 II I
22728-2 1 Laridae Ring-billed gull August 2009 ND Mountrail B1 JPXX01.1261 91 4
22728-4 1 Laridae Ring-billed gull August 2009 ND Mountrail B1 JPXX01.1261 91 4
22791-1 1 Laridae Herring gull October 2009 ME Adroscoggin B1 JPXX01.1261 91 4
22716-2 1 Laridae Franklin's gull August 2009 SD Kingsbury B3 JPXX01.1378 4 0 I A
22760-1 1 Laridae Franklin's gull September 2009 ND Burleigh B3 JPXX01.1378 4 0 I B
192432 1 Gallininae Chicken NA 2006 GA NA A1 JPXX01.0179 592 40 I C
1207A 1 Gallininae Chicken June 2006 GA NA D1 JXXP01.0111 987 140 II E
1208A 1 Gallininae Chicken June 2006 GA NA D1 JXXP01.0111 987 140 II E
5730A 1 Gallininae Chicken April 2007 GA NA D2 JPXX01.0038 1,368 157 II F
1452A 1 Gallininae Chicken July 2006 GA NA E ND II H
4677A 1 Gallininae Chicken March 2007 GA NA F JPXX01.0621 4,165 529 I D
751384A 1 Cardinalidae Northern cardinal April 2007 GA Catoosa A2 No matches IIIa N
751384B 1 Cardinalidae Northern cardinal April 2007 GA Catoosa A1 JPXX01.0179 592 32
30052B 1 Cardinalidae Northern cardinal January 2009 GA Spaulding A3 JPXX01.1043 137 33
6005419 1 Cardinalidae Northern cardinal April 2006 GA Hall A6 JPXX01.0150 603 42 IIIa K2
742217 1 Cardinalidae Northern cardinal March 2007 GA Richmond A6 JPXX01.0150 603 44
848065 1 Cardinalidae Northern cardinal May 2008 TN Coffey A6 JPXX01.0150 603 70 IIIa O
27437B 6c Cardinalidae Northern cardinal January 2009 GA Spaulding A6 JPXX01.0150 603 50 IIIa O
930052 1 Cardinalidae Northern cardinal July 2009 GA Spaulding A6 JPXX01.0150 603 50
27457E 1 Cardinalidae Northern cardinal February 2009 GA Spaulding A6 JPXX01.0150 603 50
523219 1 Fringillidae Finch November 2004 NA NA A11 JPXX01.1297 16 1
98A-33516 1 Fringillidae American goldfinch March 1998 KY McCreary A3 JPXX01.1043 137 1 IIIb U
851809 1 Fringillidae American goldfinch May 2008 NC Wilkes A3 JPXX01.1043 137 13 IIIb T1h
30453 1 Fringillidae American goldfinch February 2009 GA Dawson A3 JPXX01.1043 137 33
33463 1 Fringillidae American goldfinch February 2009 VA Floyd A3 JPXX01.1043 137 33
31876A 1 Fringillidae American goldfinch February 2009 TN Sevier A3 JPXX01.1043 137 33 IIIb T1h
31877A 1 Fringillidae American goldfinch February 2009 TN Blount A3 JPXX01.1043 137 33
33461A 4c Fringillidae American goldfinch February 2009 VA Rockbridge A3 JPXX01.1043 137 33
22477-5 1 Fringillidae American goldfinch March 2009 NC Moore A3 JPXX01.1043 137 33 IIIb T1h
34332 (liver) 1 Fringillidae House finch February 2009 GA Whitfield A3 JPXX01.1043 137 33
731877B 1 Fringillidae Purple finch February 2009 TN Blount A3 JPXX01.1043 137 33
22471-1 1 Fringillidae Purple finch March 2009 NC Caldwell A3 JPXX01.1043 137 33 IIIb T1h
28251B 3c Fringillidae Pine siskin January 2009 GA Rabun A3 JPXX01.1043 137 33 IIIb T1h
31879 1 Fringillidae Pine siskin February 2009 GA Cherokee A3 JPXX01.1043 137 33
31880 1 Fringillidae Pine siskin February 2009 GA Gilmer A3 JPXX01.1043 137 33
34331 1 Fringillidae Pine siskin February 2009 GA Whitfield A3 JPXX01.1043 137 33
22459-2 1 Fringillidae Pine siskin February 2009 MD Garrett A3 JPXX01.1043 137 33
30452C 1 Fringillidae Pine siskin February 2009 GA Dawson A3 JPXX01.1043 137 33
31876B 1 Fringillidae Pine siskin February 2009 TN Sevier A3 JPXX01.1043 137 33 IIIb T1h
31878A 2c Fringillidae Pine siskin February 2009 TN Knox A3 JPXX01.1043 137 33
32532A 4c Fringillidae Pine siskin February 2009 GA Oconee A3 JPXX01.1043 137 33 IIIb T1h
33146C (liver) 2c Fringillidae Pine siskin February 2009 SC Spartanburg A3 JPXX01.1043 137 33 IIIb T1h
33462A 3c Fringillidae Pine siskin February 2009 VA Rockbridge A3 JPXX01.1043 137 33
33464B 3c Fringillidae Pine siskin February 2009 VA Floyd A3 JPXX01.1043 137 33 IIIb T1h
34113 (liver) 1 Fringillidae Pine siskin February 2009 GA Whitfield A3 JPXX01.1043 137 33
P0905345 1 Fringillidae Pine siskin February 2009 PA Huntingdon A3 JPXX01.1043 137 33 IIIb T1h
22471-9 1 Fringillidae Pine siskin March 2009 NC Caldwell A3 JPXX01.1043 137 33 IIIb T2
22477-2 1 Fringillidae Pine siskin March 2009 NC Moore A3 JPXX01.1043 137 33 IIIb T1h
22487-2 1 Fringillidae Pine siskin March 2009 AL Calhoun A3 JPXX01.1043 137 33
34333 (liver) 1 Fringillidae Pine siskin March 2009 WV Randolph A3 JPXX01.1043 137 33 IIIb T1h
P0906327 1 Fringillidae Pine siskin March 2009 PA Huntingdon A3 JPXX01.1043 137 33 IIIb T1h
P0907343 1 Fringillidae Pine siskin March 2009 PA Bedford A3 JPXX01.1043 137 33
P0907344 1 Fringillidae Pine siskin March 2009 PA Huntingdon A3 JPXX01.1043 137 33
P0909859 1 Fringillidae Pine siskin March 2009 PA Franklin A3 JPXX01.1043 137 33
22526-4 1 Fringillidae Pine siskin April 2009 VT Orange A3 JPXX01.1043 137 33
22528-1 1 Fringillidae Pine siskin April 2009 WV Upshur A3 JPXX01.1043 137 33
P0909858 1 Fringillidae Pine siskin April 2009 PA Huntingdon A3 JPXX01.1043 137 33
P0912925 1 Fringillidae Pine siskin April 2009 PA Snyder A3 JPXX01.1043 137 33
29988 1 Fringillidae Pine siskin February 2009 GA Habersham A3 JPXX01.1043 137 33
34504 1 Fringillidae Pine siskin March 2009 WV Randolph A3 JPXX01.1043 137 33
P0917357 1 Fringillidae Pine siskin June 2009 PA Somerset A3 JPXX01.1043 137 33
22413-1 1 Fringillidae Pine siskin January 2009 WA Thurston A4 JPXX01.0199 159 22
22511-2 1 Fringillidae Pine siskin April 2009 MN Carlton A4 JPXX01.0199 159 22 IIIb V
22511-4 1 Fringillidae Common redpoll April 2009 MN Carlton A4 JPXX01.0199 159 22 IIIb T3h
739172 1 Fringillidae Canary NA NA NA NA C No matches
96-37518 1 Icteridae Brown-headed cowbird March 1996 GA Clarke A1 JPXX01.0179 592 5 IIIa L
98A-24966 1 Icteridae Brown-headed cowbird January 1998 GA Camden A1 JPXX01.0179 592 5 IIIa Q
98A-28238 1 Icteridae Brown-headed cowbird February 1998 GA Camden A1 JPXX01.0179 592 5 IIIa R
833349 1 Icteridae Brown-headed cowbird January 2008 GA Houston A12 JPXX01.1054 230 26
11203 1 Icteridae Rusty blackbird NA NA NA NA A12 JPXX01.1054 230 26
48796 1 Icteridae Red-winged blackbird August 2003 GA Glynn A6 JPXX01.0150 603 71
49052 1 Icteridae Common grackle August 2003 GA Cherokee A6 JPXX01.0150 603 71
728131 1 Icteridae Red-winged blackbird December 2006 GA Glynn A6 JPXX01.0150 603 42 IIIa O
732619 1 Icteridae Red-winged blackbird January 2007 GA Richmond A6 JPXX01.0150 603 44 IIIa M2
833347 1 Icteridae Red-winged blackbird January 2008 GA Houston A6 JPXX01.0150 603 70 IIIa K4
27951A 1 Icteridae Red-winged blackbird February 2009 GA Burke A6 JPXX01.0150 603 50 IIIa K1
27951C 1 Icteridae Red-winged blackbird February 2009 GA Burke A6 JPXX01.0150 603 50 IIIa M3
759549 1 Icteridae Brown-headed cowbird June 2007 GA Meriwether A7 No matches IIIa K3
32069 1 Icteridae Brown-headed cowbird July 2002 GA Greene A8 No matches IIIa K2
12202 1 Passeridae English sparrow NA 1998 WY NA A5 JPXX01.0002 200 2 IIIa S
A7852 1 Passeridae English sparrow NA 1998 WY NA A5 JPXX01.0002 200 2
W12198 1 Passeridae English sparrow NA 1998 WY NA A5 JPXX01.0002 200 2
P0907752 1 Passeridae House sparrow March 2009 PA Clearfield A3 JPXX01.1043 137 33
22827-1 1 Passeridae House sparrow October 2009 NJ Warren A6 JPXX01.0150 603 50 IIIa K1
49051E 1 Cardinalidae Northern cardinal August 2003 GA Bibb A10 ND IIIa M1
231449 1 Icteridae Red-winged blackbird January 2002 GA Richmond A6 JPXX01.0150 603 50 IIIa P
8008081 1 Psittacidae Parakeet NA 2009 NA NA A9 ND II J
1448Ab 1 Muridae Mouse June 2006 GA NA D2 JPXX01.0038 1,368 112 II G
1449Ab 1 Muridae Mouse June 2006 GA NA D2 JPXX01.0038 1,368 112 II G
a

S. Typhimurium isolates were organized in this table according to family and species.

b

Mice were caught in a chicken house.

c

S. Typhimurium was isolated from multiple birds of the same species. All isolates had the same PFGE pattern.

d

There were a total of 77,941 S. Typhimurium entries in the PulseNet database as of 8 March 2012 (accession date).

e

Total number of entries with a matching PFGE pattern in PulseNet.

f

Number of matches for that year of isolation.

g

Major MLVA cluster.

h

Matches with a human isolate.

i

NA, not available; ND, not done.