Table 3.
Characteristics of housekeeping loci used for T. vaginalis MLST
| Locus (abbreviation) | Sequence length (bp) | No. of SNPs | No. of alleles | θπa | No. of changes |
|
|---|---|---|---|---|---|---|
| Synonymous | Nonsynonymous | |||||
| Tryptophanase (P1) | 351 | 3 | 5 | 0.0017 | 2 | 1 |
| Glutaminase (P3) | 285 | 8 | 5 | 0.0093 | 3 | 5 |
| Family T2 aparaginase-like threonine peptidase (P6) | 318 | 10 | 6 | 0.0037 | 4 | 6 |
| Alanyl tRNA synthetase (P8) | 430 | 12 | 17 | 0.0042 | 5 | 7 |
| DNA mismatch repair protein (P13) | 447 | 6 | 12 | 0.0033 | 2 | 4 |
| Serine hydroxymethyltransferase (P14) | 339 | 1 | 2 | 0.0011 | 1 | 0 |
| Mannose 6-phosphate isomerase (P16) | 372 | 3 | 4 | 0.0014 | 1 | 2 |
a
Nucleotide diversity per site.