Table 1.
Parameters Used in ms (Hudson 2002) for the Recent Admixture and Ancient Structure Models.
| Parameter | Recent Admixture | Ancient Structure |
|---|---|---|
| θ (4Nμ) | 20 | 20 |
| Admixture rate (f) | {0.02, 0.03, 0.05, 0.1} | NA |
| Admixture time (tGF) | 0.05 | NA |
| African/Non-African coalescence time (tH) | 0.1125 | 0.1125 |
| Neanderthal/human coalescence time (tN) | 0.3 | 0.3 |
| Ancient migration time (T) | NA | {0.3, 0.35, … , 0.8} |
| Ancient migration rate (4Nm) | NA | {0,1, … ,10} |
| Bottleneck time (tb) | {0.03, 0.1} | {0.03, 0.1} |
| Bottleneck effect (b) | 0.01 | 0.01 |
| Ongoing gene flow (4Nmt) | {0, 1, 5} | {0, 1, 5} |
| Time of population growth (tg) | 0.1150 | 0.1150 |
| Amount of population growth (g) | 100 | 100 |
NOTE.—“μ” refers to the neutral mutation rate for the entire locus.