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. 2012 Sep 25;7(9):e44619. doi: 10.1371/journal.pone.0044619

Table 1. Primers used for differential detection of genome segment Seg-2 (S2-genotyping) and Seg-6 of BTV serotype 1, 6, and 8.

namea sequence expected amplicon size (bp)
BTV1VP2/283-1F TTGTTGAAAGTACGAGACACAAGAG 175
BTV1VP2/457-1R GTATCAGCCTTCTTTGAATCGATT
BTV1.1VP2 probe CATCCACTGCACCCACTGGTCA
BTV6VP2/1757-5F AGGAACAGTCGGCTTATCAC 192
BTV6VP2/1948-5R TTCGCTAATGTGCTTCTCCAT
BTV6.5 VP2 probe TTGTCAGCTTTACGCAAACCCCG
BTV8VP2/1873-4F CGGAGACAGCGCAGTATGTA 225
BTV8VP2/2097-4R CCTCGGTAGTATCCCTCACG
BTV8.4 VP2 probe ACATACGATGCCYTCGGAGGATTCTG
BTV1S6F1 AGTGATCAATGCTTTAAGCGGG 831
BTV1S6R GTAAGTGTAAGTGCTTCCCGTC
BTV6S6F1 GTTAAAAAGATCCCCATGAT 490
BTV6S6R4 CGCTTTACAGAGCACCTTAT
BTV8S6F GTTAAAAAAGCGATCGCTTTCG 638
BTV8S6R4 GCCTCTTTTAACGCATCG

a. Primers were purchased with Eurogentec Benelux. Probes were purchased with TibMolBiol Berlin and are labeled with FAM at the 5′-end, and with the black hole quencher (BHQ) at the 3′-end.