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RDP classification of the sequences at phylum and class levels. RDP classifier was used with a bootstrap cutoff of 50. Pooled sequence reads from all 10 pigs in each group were used. (A) RDP classification of the sequence reads from farm 1 at phylum level. (B) RDP classification of the sequence reads from farm 2 at phylum level. (C) RDP classification of the sequence reads from farm 1 at class level. (D) RDP classification of the sequence reads from farm 2 at class level.
