Table 1.
dbSNP identifier | gene | 2N | major:minor allele (1:2) | predicted protein variant | genotypes (11:12:22) | MAF in chronic tinnitus | MAF in unrelated Caucasian controls (N) | p association (p corrected) | |
---|---|---|---|---|---|---|---|---|---|
rs2049046 | BDNF | 480 | A:T | - | 69:105:66 | 0.494 | 0.467 (379)a | n.s. | |
0.481 (128) | [51] | n.s. | |||||||
0.476 (287) | [52] | n.s. | |||||||
rs6265 | BDNF | 480 | G:A | V66M | 155:76:9 | 0.196 | 0.191 (4299)b | n.s. | |
0.203 (379)a | n.s. | ||||||||
0.137 (128) | [51] | 0.05 (0.74) | |||||||
0.190 (2100) | [53] | n.s. | |||||||
0.213 (839) | [54] | n.s. | |||||||
0.185 (664) | [55] | n.s. | |||||||
0.218 (333) | [56] | n.s. | |||||||
0.175 (2184) | [57] | n.s. | |||||||
rs1110149 | GDNF | 480 | G:C | - | 62:121:57 | 0.490 | 0.410 (379)a | 0.007 (0.10) | |
rs884344 | GDNF | 480 | T:G | - | 125:101:14 | 0.269 | 0.236 (379)a | n.s. | |
rs3812047 | GDNF | 476 | G:A | - | 178:52:8 | 0.143 | 0.144 (379)a | n.s. |
all alleles refer to the transcribed strand, MAF = minor allele frequency.
reference population of European ancestry from the 1000 Genomes Project, July 2010 data release (URL: http://www.1000genomes.org), accessed July 2012;
reference population of European ancestry from the NHLBI GO Exome Sequencing Project. Data retrieved with the Exome Variant Server (URL: http://evs.gs.washington.edu/EVS/), accessed July 2012.