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. 2012 Sep 27;7(9):e46399. doi: 10.1371/journal.pone.0046399

Table 1. Correlation of individual TRFs with their corresponding bacteria to different correlation clusters.

Cluster TRF (bp) Best sequence identity (Phylum) Correlation P-value
DSS cluster 32 Escherichia coli/Shigella (P) 0.00001
205 Neisseria spp. (P) 0.00013
234 Turicibacter spp. (F) + 0.0002
237 Oscillibacter, unclassified Clostridiales (F,F) + 0.0002
245 Lactobacillus murinus (F) + 0.0002
261 unclassified Lachnospiraceae (F) + 0.0002
262 Acetivibrio spp. (F) + 0.004
263 Bacteroides vulgatus (B) + 0.016
267 Helicobacter ganmani (P) + 0.016
271 unclassified Clostridiales (F) + 0.001
273 unclassified Clostridiales, Subdoligranulum (F,F) + 0.005
277 unclassified Ruminococcaceae (F) + 0.0002
283 unclassified Lachnospiraceae, unclassified Clostridiales (F,F) + 0.0003
288 Sporacetigenicum spp. (F) + 0.0001
305 Streptococcus spp. (F) + 0.0012
316 Anaerococcus spp. (F) + 0.0002
331 Lactobacillus johnsonii (F) + 0.001
Firm mucus 63 L. reuteri, Propionibacterium, Corynebacterium (F,A,A) 0.0096
cluster 70 Bifidobacterium animalis (A) + 0.0015
251 Acinetobacter johnsonii (P) + 0.001
271 Coprobacillus spp. (F) + 0.001
307 Streptococcus mitis (F) 0.0022
Loose mucus 88 Parabacteroides spp. (B) + 0.009
cluster 194 Bradyrhizobium spp. (P) + 0.006