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. 2012 Jun 8;30(3):1237–1252. doi: 10.1007/s11032-012-9711-1

Table 2.

Selected candidate reference genes, primers, annealing temperatures, amplicon lengths, and actual amplification efficiencies

Gene Primers Sequence Annealing temp. (°C)a Amplicon length (bp) E (±SD)b
ACT11 act11-F3 CCCAAGGCAAACCGAGAGAAG 60 150 1.00 (0.031)
act11-R2 GTGGCTCACACCATCACCAG
ACT act-1 GAGAAGATACAGTGTCTGGA 52 231 0.88 (0.073)
act-2 ATTACCATCGAAATATTAAAAG
EF1 EF1-F2 CGGAGCGTGAAAGAGGAAT 62 185 0.99 (0.069)
EF1-R2 ACCAGCTTCAAAACCACCAG
L2 L2-F2 AGGGTTCATAGCCACACCAC 61 100 1.00 (0.064)
L2-R2 CCGAACTGAGAAGCCCCTAC
25S 25S-1 ACATTGTCAGGTGGGGAGTT 59 106 0.79 (0.053)
25S-2 CCTTTTGTTCCACACGAGATT
TUB tub-F1 TGTTGCATCCTGGTACTGCT 61 112 0.98 (0.032)
tub-R1 GGCTTTCTTGCACTGGTACAC

aAs determined by gradient PCR

bEfficiency of PCR amplification (±standard deviation)