TABLE 1.
Data collection and refinement statistics
Data set |
||||
---|---|---|---|---|
Apo orthorhombic | Apo tetragonal | Palmitoylated | Carboxypalmitoylated | |
Data collection | ||||
Beam line | ID14-4 | ID14-1 | ID14-4 | ID14-2 |
Space group | P21212 | P41212 | P41212 | P41212 |
Unit cell dimensions a, b, c (Å) | 108.66, 119.81, 50.16 | 106.56, 106.56, 258.61 | 105.89, 105.89, 259.62 | 106.33, 106.33, 261.69 |
Resolution limits (Å) | 45.0-2.6 (2.7-2.6)a | 41.7-2.3 (2.4-2.3) | 52.9-2.2 (2.3-2.2) | 49.4-2.5 (2.6-2.5) |
No. of measured reflections | 79,508 | 274,785 | 481,764 | 191,134 |
No. of unique reflections | 20,741 | 65,097 | 69,116 | 49,363 |
Completeness (%) | 99.6 (99.9) | 96.9 (83.4) | 91.5 (89.5) | 92.8 (91.5) |
Rsym | 10.6 (36.8) | 6.7 (32.9) | 7.0 (31.6) | 7.2 (47.6) |
I/σI | 3.9 (1.6) | 8.6 (2.3) | 7.0 (2.4) | 8.5 (1.6) |
BWilson (Å2) | 43.0 | 41.5 | 42.2 | 63.3 |
Refinement statistics | ||||
Resolution range (Å) | 42.6–2.6 | 41.1–2.3 | 50.0–2.2 | 47.0–2.5 |
No. of reflections work/test | 19,692/1,016 | 61,727/3,291 | 65,571/3,439 | 46,742/2,524 |
No. of molecules/A.U. | 1 | 2 | 2 | 2 |
Rwork | 0.187 | 0.200 | 0.223 | 0.228 |
Rfree | 0.264 | 0.260 | 0.265 | 0.278 |
No. of atoms | ||||
Protein atoms | 3,466 | 6,968 | 6,959 | 6,888 |
Peptide atoms | 72 | 161 | 148 | 73 |
Ligand atoms | —b | — | 34 | 47 |
Water/other solvent heteroatoms | 145/50 | 351/44 | 234/52 | 98/60 |
r.m.s.d.c bond lengths (Å) | 0.024 | 0.019 | 0.011 | 0.007 |
r.m.s.d. bond angles (°) | 2.147 | 2.068 | 1.475 | 1.327 |
Mean temperature factor (Å2) | ||||
Protein main chain | 26.6 | 38.7/35.7d | 44.8/41.9 | 44.3/51.6 |
Protein side chain | 27.9 | 40.4/37.4 | 46.9/44.2 | 45.6/52.5 |
Peptide overall | 55.8 | 88.0/54.4 | 84.4/56.4 | —/72.2 |
Ligand | — | — | 58.6/55.5 | 40.4/66.2 |
Water/other solvent entities | 26.6/55.7 | 39.2/67.1 | 45.7/67.1 | 43.1/76.8 |
a Values in parentheses are for highest resolution shell.
b —, not applicable.
c r.m.s.d., root mean square deviation.
d Mean temperature factor values related to each of the two molecules in the asymmetric unit (A.U.) have been indicated separately.