Table 1.
High throughput read sets analyzed in this study
| Species | N | Read type | Accession (reads) | MLST database | Reference genome |
|---|---|---|---|---|---|
|
Staphylococcus aureus[4] |
67 |
37 bp SE |
ERP000070 |
http://saureus.mlst.net/ |
NC_002952.2 |
|
Salmonella bongori[17] |
18 |
54 bp PE |
ERP000328 |
http://mlst.ucc.ie/mlst/ |
NC_011900.1 |
|
Streptococcus pneumoniae[6] |
256 |
54 bp PE |
ERP000139 |
http://spneumoniae.mlst.net/ |
NC_011149.1 |
| Shigella sonnei[19] | 188 | 54 bp PE | ERP000182 | http://mlst.ucc.ie/mlst/ | NC_000913.2 |
PE = paired end sequencing, SE = single end sequencing.