Table 5.
Distribution of SYT-SSX2-overlapping epigenetic markers relative to transcription start sites of upregulated genes
| Marker | In | 0-5 | 5-10 | 10-15 | 15-20 | 20-25 | 25-30 | 30-35 | 35-40 | 40-45 | 45-50 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| DNA me |
9.55 |
4.46 |
0.32 |
0.96 |
0.32 |
0 |
0 |
0.64 |
0.32 |
0.64 |
0.64 |
| H3K4me1 |
18.8 |
5.10 |
2.23 |
5.41 |
5.73 |
2.55 |
6.37 |
3.82 |
4.46 |
4.46 |
5.73 |
| H3K4me2 |
8.28 |
5.10 |
0.32 |
1.27 |
0.64 |
0.64 |
0.96 |
0.32 |
0.96 |
0.96 |
0.64 |
| H3K4me3 |
8.60 |
4.14 |
0.64 |
1.27 |
0.32 |
0.64 |
0.64 |
0.32 |
0.64 |
1.27 |
0.96 |
| H3K27me3 |
50.0 |
31.2 |
29.3 |
25.7 |
23.9 |
24.5 |
23.6 |
21.3 |
21.3 |
22.0 |
19.4 |
| H3K9Ac |
5.10 |
0.64 |
0.32 |
0.64 |
0 |
0.32 |
0.96 |
0.32 |
0.64 |
1.91 |
0.64 |
| H3K18Ac |
9.24 |
2.23 |
1.91 |
2.23 |
2.55 |
2.55 |
2.55 |
2.23 |
3.82 |
4.78 |
3.50 |
| H3K36me3 |
2.87 |
0 |
0 |
0.32 |
0.64 |
0.32 |
0.32 |
0.96 |
0 |
0.96 |
0.32 |
| H4K12Ac |
7.32 |
1.27 |
0.64 |
1.59 |
1.27 |
0.96 |
0.64 |
1.27 |
1.59 |
1.91 |
0.96 |
| H2BUb |
1.27 |
0 |
0 |
0.32 |
0.32 |
0.64 |
0.32 |
0.64 |
0 |
0.32 |
0 |
| PolII | 10.2 | 3.18 | 1.59 | 1.91 | 1.27 | 1.27 | 1.27 | 1.59 | 1.27 | 2.23 | 2.55 |
Percentages are relative to the total number of upregulated genes with SYT-SSX2 peaks that overlap any epigenetic marker from 0-50kb upstream of the TSS and including the gene body (total = 314). Numbers in first row represent distances measured in kilobases.