Table 1.
Locus | RefSNP number (dbSNP) |
Single nucleotide polymorphism |
Domain | Number of samples successfully genotyped |
Allele frequencies |
Hardy Weinberg equilibrium |
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Primary cohort |
Secondary cohort |
Primary cohort |
Secondary cohort |
Primary cohort |
Secondary cohort |
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Major | Minor | Major | Minor | χ 2 | P value |
χ 2 | P value |
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MPO | rs2243828 | −765 T to C | Promoter | 260 | 277 | T: 0.692 | C: 0.308 | T: 0.727 | C: 0.273 | 0.22 | 0.64 | 0.23 | 0.63 |
MPO | rs7208693 | 157 G to T | Exon 2 (Val53Phe) |
262 | 277 | C: 0.874 | A: 0.126 | C: 0.884 | A: 0.116 | 3.14 | 0.08 | 2.51 | 0.11 |
MPO | rs2071409 | 9890 A to C | Intron 11 | 260 | 275 | A: 0.771 | C: 0.229 | A: 0.798 | C: 0.202 | 1.41 | 0.23 | 2.02 | 0.16 |
MPO | rs2759 | 2149 T to C | Exon 12 (Ile717Val) |
259 | 274 | T: 0.932 | C: 0.068 | T: 0.923 | C: 0.077 | 1.36 | 0.24 | 0.27 | 0.60 |