Table 2.

Genotyping success of gene single-nucleotide polymorphisms (SNPs) using the Illumina GoldenGate multiplex assay

Gentrain score*	Total number of SNPs assayed	Number of SNPs showing no polymorphism	Number of segregating SNPs considered for analysis
≤0.25 (failed)	281	–	–
0.25–0.30	18	1	17
0.30–0.40	68	23	45
0.40–0.50	95	23	72
0.50–0.60	169	46	123
0.60–0.70	201	13	188
0.70–0.80	484	15	469
0.80–0.90	219	0	219
0.90–1.00	1	0	1
Total	1536†	121	1134‡

^*According to the study of Fan et al. (2003).

^†Including 30 indels of 1–30 bp.

^‡Representative of 709 genes and including 21 indels of 1–6 bp.