(b)
| PATS typea | PCR amplification and restriction digestion patterns of amplicons obtained using 7 PATS primer pairsd | Isolatesc | ||||||
|---|---|---|---|---|---|---|---|---|
| IKNR3 | IKNR7 | IKNR10 | IKNR12 | IKNR16 | IKNR27 | IKNR33 | ||
| 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 5, 168, 817, 908, 928, 977, 1015, 1492 |
| 2 | 2 | 2 | 2 | 0 | 2 | 2 | 2 | 268, 757, 806, 807 |
| 3 | 2 | 2 | 2 | 2 | 1 | 2 | 2 | 1041 |
| 4 | 0 | 2 | 2 | 2 | 1 | 2 | 2 | 827, 5671, 5974 |
| 5 | 1 | 2 | 2 | 2 | 1 | 2 | 0 | 214, 528, 961, 1016, 1273, 1286, 1328 |
| 6 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 425, 935 |
aPATS types are designated arbitrarily with different numbers.
bPrefixes of each PATS primer pair A/B are indicated. 0: no amplicon; 2: amplicon with one XbaI site.
cBovine E. coli O157:H7 isolates from different locations that fell within a given PATS type.
dPrefixes of each PATS primer pair A/B are indicated. 0: no amplicon; 1: amplicon without AvrII site; 2: amplicon with one AvrII site.