Table 3. Refinement statistics.
Proteins | Z2-bis | Z2-cac | Z2 | Z3 | Z6 | Z8-PO4 | Z8-apo | Z16 | |
---|---|---|---|---|---|---|---|---|---|
Label | SeMet | SeMet | Native | Native | SeMet | Native | Native | SeMet | |
Resolution (Å) | 1.70 | 1.75 | 2.00 | 3.00 | 2.30 | 1.76 | 2.60 | 2.70 | |
Space Group | C2221 | C2221 | P21 | P65 | P3121 | P212121 | P21212 | P4332 | |
Unit cell | a (Å) | 67.3 | 67.5 | 46.5 | 129.5 | 133.7 | 74.1 | 78.0 | 184.9 |
b (Å) | 88.5 | 87.7 | 98.4 | 129.5 | 133.7 | 79.4 | 115.0 | 184.9 | |
c (Å) | 99.2 | 99.0 | 71.0 | 404.7 | 32.5 | 123.1 | 69.6 | 184.9 | |
β (°) | 87.5 | ||||||||
Za a | 1 | 1 | 2 | 10 | 1 | 2 | 2 | 2 | |
Solvent content | 46% | 45% | 52% | 59% | 54% | 53% | 46% | 72% | |
Unique | 31298 | 28471 | 41368 | 72589 | 14044 | 68773 | 18510 | 28663 | |
reflections | |||||||||
Total atoms | 2306 | 2275 | 4643 | 21176 | 2229 | 5184 | 4317 | 3984 | |
Protein atoms | 2062 | 2066 | 4139 | 21117 | 2114 | 4552 | 4285 | 3849 | |
Water | 230 | 183 | 456 | 49 | 111 | 584 | 30 | 93 | |
Ligand | bistris | SO4 | bistris | EDO | PO4 | MPD | |||
Rwork b | 18.1 | 18.9 | 17.8 | 23.2 | 18.1 | 18.2 | 25.3 | 20.5 | |
Rfree c | 21.1 | 23.4 | 24.6 | 27.7 | 24.5 | 22.2 | 32.4 | 25.6 | |
RMS Bond (Å) | 0.027 | 0.027 | 0.024 | 0.018 | 0.022 | 0.026 | 0.013 | 0.021 | |
RMS angle (Å) | 2.079 | 1.950 | 1.958 | 1.892 | 1.956 | 2.117 | 1.431 | 2.417 | |
Bfactor (Å2) | 22.8 | 21.4 | 22.9 | 75.5 | 27.2 | 24.9 | 58.6 | 41.8 | |
PDB code | 3LI9 | 3LI8 | 3LIA | 3LIB | 3LIC | 3LID | 3LIE | 3LIF |
Za stands for number of molecules per asymmetric unit.
Rwork = (Σ ∥Fo | − |Fc∥) / Σ|Fo|, where Fo and Fc denote observed and calculated structure factors, respectively.
Rfree was calculated using 5% of data excluded from refinement.