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. 2012 Oct 1;6:70. doi: 10.3389/fncom.2012.00070
Model Parameters Descriptions Values
Glutamate diffusion: Glur,t,Q,D,δ=Q4πδDte-rz4Dt Q Number of glutamate molecules 3,000
δ Cleft height 20 nm
D Glutamate diffusion coefficient 0.4 μm2 ms−1
R Distance between the release site and the receptors or transporters 0–400 nm
t Time ms
Glutamate uptake rate per transporter: dGluodt=k6×Na2ToH×Glu-k-6×Na2ToGH+k3×Glu×Na2To-k-3×Na2ToG k6, k3
k−6, k−3
Forward rate constants
Backward rate constants
6 mM−1 ms−1
0.5 ms−1
Glutamate at receptor after uptake:
Glu – ∈tdGluo
N2ToH, N2ToGH, N2To, N2ToG Intermediate states of the glutamate transporter Dynamically change during simulation
Number of glial glutamate transporters 325
Number of neuronal glutamate transporters 42
AMPAR-mediated current: IAMPA=nbAMPA×g2O2+g3O3+g4O4×V-Vrev Robert and Howe (2003) nbAMPA Number of AMPA receptors 80
g2, g3, g4 Unitary channel conductances associated with open states O2, O3, O4 updated during simulation 9,15, 21 pS respectively
V Membrane potential Dynamically changes during simulation
Vrev Reversal potential 0 mV
NMDAR-mediated current:
INMDA=nbNMDAIo1+(Mg02+K0)eδzFΨm/RTIo=g(VVrev)O(t)g=g1+gzg11+eαΨm
nbNMDA Number of NMDA receptors 20
IO current associated with the open conducting state O Dynamically changes during simulation
V Membrane potential Dynamically changes during simulation
Vrev Reversal potential 0.7 mV
Mg2+ External Mg concentration 1 mM
α is the steepness of the voltage-dependent transition from g1 to g2 0.01
R molar gas constant 8.31434 J mol-1 K-1
F Faraday constant 9.64867.104 C mol-1
T absolute temperature 273.15^ K
Synaptic current: Isyn = IAMPA + INMDA IAMPA Current through AMPARs Dynamically changes during simulation
INMDA Current through NMDARs Dynamically changes during simulation
Neuron model please, see Jarsky et al. (2005) Simulation archive available from http://dendrites.esam.northwestern.edu/