Model | Parameters | Descriptions | Values |
---|---|---|---|
Glutamate diffusion: | Q | Number of glutamate molecules | 3,000 |
δ | Cleft height | 20 nm | |
D | Glutamate diffusion coefficient | 0.4 μm2 ms−1 | |
R | Distance between the release site and the receptors or transporters | 0–400 nm | |
t | Time | ms | |
Glutamate uptake rate per transporter: |
k6, k3 k−6, k−3 |
Forward rate constants Backward rate constants |
6 mM−1 ms−1 0.5 ms−1 |
Glutamate at receptor after uptake: Glu – ∈tdGluo |
N2ToH, N2ToGH, N2To, N2ToG | Intermediate states of the glutamate transporter | Dynamically change during simulation |
Number of glial glutamate transporters | 325 | ||
Number of neuronal glutamate transporters | 42 | ||
AMPAR-mediated current: Robert and Howe (2003) | nbAMPA | Number of AMPA receptors | 80 |
g2, g3, g4 | Unitary channel conductances associated with open states O2, O3, O4 updated during simulation | 9,15, 21 pS respectively | |
V | Membrane potential | Dynamically changes during simulation | |
Vrev | Reversal potential | 0 mV | |
NMDAR-mediated current: |
nbNMDA | Number of NMDA receptors | 20 |
IO | current associated with the open conducting state O | Dynamically changes during simulation | |
V | Membrane potential | Dynamically changes during simulation | |
Vrev | Reversal potential | 0.7 mV | |
Mg2+ | External Mg concentration | 1 mM | |
α | is the steepness of the voltage-dependent transition from g1 to g2 | 0.01 | |
R | molar gas constant | 8.31434 J mol-1 K-1 | |
F | Faraday constant | 9.64867.104 C mol-1 | |
T | absolute temperature | 273.15^ K | |
Synaptic current: Isyn = IAMPA + INMDA | IAMPA | Current through AMPARs | Dynamically changes during simulation |
INMDA | Current through NMDARs | Dynamically changes during simulation | |
Neuron model please, see Jarsky et al. (2005) | Simulation archive available from http://dendrites.esam.northwestern.edu/ |