Table 4.
Conserved miRNA targets and their putative functions
|
miRNA |
Target function |
Targeta |
Conserved withb |
||||
|---|---|---|---|---|---|---|---|
| ath | osa | ptc | pta | tch | |||
| Cln-miR156 |
SBP-domain protein |
Unigene2030 (2) |
+ |
+ |
+ |
+ |
+ |
| |
|
Unigene2872 (2) |
|
|
|
|
|
| Cln-miR158 |
Unknown |
Unigene28340 (4) |
+ |
– |
– |
– |
– |
| Cln-miR164 |
Pentatricopeptide repeat-containing protein |
Unigene7992 (3) |
+ |
+ |
+ |
– |
+ |
| Cln-miR168 |
Argonaute protein |
Unigene6526 (3) |
+ |
+ |
+ |
+ |
+ |
| Cln-miR172 |
APETALA2-like protein |
Unigene17425 (1.5) |
+ |
+ |
+ |
+ |
+ |
| |
|
Unigene56981 (0.5) |
|
|
|
|
|
| Cln-miR394 |
BolA-like family protein |
Unigene56583 (4) |
+ |
– |
+ |
– |
– |
| Cln-miR400 |
Pentatricopeptide repeat-containing protein |
Unigene49313 (2) |
+ |
– |
– |
– |
– |
| |
|
Unigene53642 (3) |
|
|
|
|
|
| Cln-miR408 |
Basic blue copper protein |
Unigene57297 (2) |
+ |
+ |
– |
– |
– |
| Cln-miR828 |
MYB transcription factor |
Unigene2867 (2) |
+ |
– |
– |
– |
– |
| |
|
Unigene15489 (2.5) |
+ |
– |
– |
– |
– |
| |
|
Unigene42567 (2.5) |
|
|
|
|
|
| Cln-miR858 |
MYB transcription factor |
Unigene58181 (2.5) |
|
|
|
|
|
| |
|
Unigene22248 (2) |
|
|
|
|
|
| Unigene6437 (3) | |||||||
a All predicted miRNA targets with penalty scores (shown in parentheses) of 4 or less are listed.
bAth, osa, ptc, pta and tch represent abbreviations for A. thaliana, O. sativa, P. trichocarpa, P. taeda and T. chinensis, respectively.