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. 2012 Jul 30;28(19):2449–2457. doi: 10.1093/bioinformatics/bts475

Fig. 1.

Fig. 1.

(a) The deep-NN architecture consists of a 3D stack of neural networks Inline graphic with identical architecture but different weights. When i and y vary, the outputs of the Inline graphic correspond to the predicted contact map at level k of the stack. A neural network Inline graphic purely spatial input features that depend only on i and j and are identical at all levels of the stack, and temporal input features associated with the contact probabilities predicted in the previous layer over a receptive field neighborhood of ij. (b) Input feature vector of each Inline graphic