Figure 4. Footprint derived from the same excision event. A MITE is present in cultivar Nipponbare but absent in the other ten cultivars. Its TSD sequences (TA) are underlined and part of the TIR sequences (framed) are shown. The central part of the MITE is omitted as show by “….” Dash in the alignment represents missing nucleotide. The footprint includes an inclusion of 10 extra nucleotides (shaded) and deletion of 7 nucleotides (shaded). The first column is cultivar name: 931 for 93–11, Nan for Nanjing 11, Min for Minghui 63, Yan for Yanshuichi, Teq for Teqing, Wuk for Wukezhan, Hei for Heimichan, Zho for Zhongzao 18, Zhe for Zhenshan 97 and Nip for Nipponbare.