Table 3. Plasmid-encoded genes with highest transcript levels exclusively expressed by the pathogenic variant of the L. intracellularis isolate PHE/MN1-00.
| Locus | Gene | Description | Log2 (RPKM) |
| Biological function | |||
| Plasmid A | |||
| LIA022 | cell wall biosynthesis glycosyltransferase | 12.1 | |
| LIA025 | plasmid stabilization system protein | 11.7 | |
| LIA017 | bchE | Fe-S oxidoreductase | 11.2 |
| Plasmid B | |||
| LIB002 | PbsX family transcriptional regulator | 13.5 | |
| LIB017 | hypothetical protein | 12.1 | |
| LIB019 | hypothetical protein | 13.3 | |
| Plasmid C | |||
| LIC047 | hypothetical protein | 12.8 | |
| LIC056 | hypothetical protein | 16 | |
| LIC079 | hypothetical protein | 11.4 | |
| LIC091 | hypothetical protein | 11.4 | |