Table 5.
Identification of proteins from cell surface or cellular location with affinity for α1(XI)NTD by affinity chromatography-mass spectrometry.
| Protein namea | Common Abbreviationb |
Mr Pred.c (kDa) |
Mr Experimentald (kDa) |
Peptide Matchese | Seq.cov.(%)f |
|---|---|---|---|---|---|
| Cell Surface Location | |||||
| Annexin I | ANXA1 | 29.1 | 35, 32 | 9 | 39 |
| Annexin II | ANXA2 | 49.4 | 38,35,32 | 14 | 40 |
| Annexin V | ANXA5 | 36.1 | 35 | 16 | 62 |
| Calreticulin (GRP60) | CALR | 48 | 55 | 6 | 18 |
| Nucleolin | NUCL | 77.4 | 100 | 10 | 13 |
| Protein Fate and Modification | |||||
| Procollagen -lysine, 2-oxoglutarate 5-dioxygenase 1 | PLOD1 | 83.5 | 75 | 8 | 16 |
| Protein disulfide isomerase A3 | PDIA3 | 56.7 | 60,55 | 17 | 39 |
| Protein Disulfide Isomerase A4 | PDIA4 | 72.5 | 75 | 8 | 18 |
| Heat shock 70kDa protein 5(GRP78) | HSPA5 | 72.3 | 75 | 8 | 18 |
| Tumor rejection antigen (gp96 or HSP90B1) | HSP90B1 | 92.4 | 100 | 6 | 9 |
| Metabolic, cytoskeletal, and nuclear proteins | |||||
| Fructose Bisphophate Aldolase | ALDOA | 39.5 | 45,38 | 10 | 30 |
| Serotransferrin | TF | 77.8 | 75 | 8 | 12 |
| Lactate dehydrogenase A | LDHA | 36.6 | 32, 35 | 9 | 31 |
| Actin, beta | ACTB | 42 | 29 | 13 | 45 |
| Alpha-actinin 4 | ACTN4 | 104.8 | 100 | 9 | 15 |
| Acidic leucine-rich nuclear phosphoprotein 32 family member B | ANP32B | 29.9 | 32 | 5 | 15 |
Full name of reference sequence;
Common protein abbreviation;
Predicted Mr according to NCBI;
Experimental Mr calculated by analysis of gel images;
Number of peptide matches corresponding to the reference sequence;
Sequence coverage calculated as the number of amino acids identified of the total number of amino acids in reference sequence.