Table 1. Summary of ANOVAs from all analyses.

			F value
Chr	Dataset	Trait	Genotype	Loc or Chambera	R2
Chr5	09FD_120	09FD_120 Loc1 LEAF	1.69 **	–	0.47
		09FD_120 Loc2 LEAF	2.77 ***	–	0.77
		09FD_120 Loc1&2 STEM	5.03 ***	0.01 ns	0.64
	10FD_83	10FD-early_83 Loc1&2 LEAF	7.02 ***	68.70 ***	0.77
		10FD-early_83 Loc1 STEM	5.63 ***	–	0.59
		10FD-early_83 Loc2 STEM	5.78 ***	–	0.66
		10FD-late_83 Loc1&2 LEAF	4.49 ***	0.02 ns	0.50
		10FD-late_83 Loc1 STEM	1.72 **	–	0.43
		10FD-late_83 Loc2 STEM	4.40 ***	–	0.61
	GC_120	GC_120 p7629 LEAF	3.67 ***	0.82 ns	0.60
		GC_120 p10353 LEAF	2.58 ***	0.02 ns	0.78
		GC_120 Sal10 LEAF	1.88 ***	0.18 ns	0.81
		GC_120 p7629 STEM	2.36 ***	1.25 ns	0.55
		GC_120 p10353 STEM	1.75 ***	0.03 ns	0.67
		GC_120 Sal10 STEM	1.36 ns	0.22 ns	0.74
Chr11	09FD_120	09FD_120 Loc1&2 LEAF	2.22 ***	19.00 *	0.74
		09FD_120 Loc1&2 STEM	2.77 ***	1.30 ns	0.55
	10FD_83	10FD-early_83 Loc1&2 LEAF	6.42 ***	60.36 ***	0.74
		10FD-early_83 Loc1 STEM	4.12 ***	–	0.52
		10FD-early_83 Loc2 STEM	4.93 ***	–	0.62
		10FD-late_83 Loc1 LEAF	5.10 ***	–	0.62
		10FD-late_83 Loc2 LEAF	3.01 ***	–	0.52
		10FD-late_83 Loc1 STEM	2.31 ***	–	0.45
		10FD-late_83 Loc2 STEM	3.98 ***	–	0.60
	GC_120	GC_120 p7629 LEAF	1.90 ***	0.49 ns	0.53
		GC_120 p10353 LEAF	1.95 ***	0.01 ns	0.63
		GC_120 Sal10 LEAF	2.05 ***	0.29 ns	0.78
		GC_120 p7629 STEM	2.59 ***	0.44 ns	0.54
		GC_120 p10353 STEM	1.64 **	0.04 ns	0.61
		GC-1_120 Sal10 STEM	1.40 ns	–	0.84
		GC-2_120 Sal10 STEM	1.21 ns	–	0.78
		GC-3_120 Sal10 STEM	2.42 ***	–	0.66

Within each chromosome, trait names are given according to the dataset, the location or isolate, and the trait evaluated (see Materials and Methods for details). F values are presented for all relevant main effects included in the model. R² indicates the fit of the data to the linear additive model for each analysis. ns = not significant. ^*P ≤ 0.05; ^**P ≤ 0.01; ^***P ≤ 0.001.

^aLocation (Loc) was tested in the Field experiments; Chamber was tested in the GC experiments. A dash (‑) means not included in model.