Skip to main content
. 2012 Apr 17;12:56. doi: 10.1186/1471-2180-12-56

Table 3.

The efficiency andr2-value results from laboratory evaluation of the BactQuant assay using genomic DNA from ATCC strains and clinical isolates belonging to 106 unique bacterial species spanning eight bacterial phyla

Species Name Reaction efficiency r2-value
Streptomyces violaceoruber
93%
>0.999
Mycobacterium abscessus
110%
>0.999
Mycobacterium bovis
106%
>0.996
Mycobacterium chelonae
101%
>0.999
Mycobacterium gastri
104%
>0.999
Mycobacterium gordonae
104%
>0.999
Mycobacterium fortuitum
93%
>0.999
Mycobacterium kansasii
107%
>0.999
Mycobacterium marinum
110%
>0.990
Mycobacterium nonchromogenicum
101%
>0.999
Mycobacterium phlei
104%
>0.999
Mycobacterium smegmatis
105%
>0.999
Mycobacterium vaccae
120%
>0.999
Mycobacterium xenopi
112%
>0.999
Bacteroides ureolyticus
92%
>0.999
Bacteroides fragilis
82%
>0.993
Chlamydia trachomatis
N/A
N/A
Chlamydophila pneumoniae
N/A
N/A
Thermus thermophilus
97%
>0.999
Clostridium difficile
88%
>0.987
Listeria monocytogenes
104%
>0.999
Staphylococcus arlettae
96%
>0.998
Staphylococcus capitis
95%
>0.993
Staphylococcus cohnii
104%
>0.999
Staphylococcus epidermidis
96%
>0.999
Staphylococcus equorum
85%
>0.997
Staphylococcus hominis
108%
>0.999
Staphylococcus haemolyticus
90–104%
>0.999
Staphylococcus kloosii
98%
>0.999
Staphylococcus lugdunensis
94%
>0.999
Staphylococcus saprophyticus
87–98%
>0.999
Staphylococcus xylosus
81–100%
>0.999
Streptococcus agalactiae
98%
>0.998
Streptococcus pneumoniae
98%
>0.999
Streptococcus viridans
103%
>0.999
Enterococcus faecium
91–111%
>0.999
Enterococcus faecalis
90–100%
>0.998
Fusobacterium nucleatum
90%
>0.999
Burkholderia pseudomallei
103%
>0.999
Coxiella burnetti*
100%
>0.998
Francisella tularensis
100%
>0.999
Legionella pneumophila
98%
>0.999
Neisseria gonorrhoeae
95%
>0.997
Pseudomonas aeruginosa
90–100%
>0.999
Pseudomonas mendocina
93%
>0.999
Pseudomonas andersonii
90%
>0.999
Pseudomonas otitidis
93%
>0.999
Pseudomonas stutzeri
86%
>0.999
Pseudomonas monteilii
88%
>0.999
Pseudomonas azotofixans
84%
>0.999
Pseudomonas mosselii
92%
>0.999
Pseudomonas luteola
91%
>0.999
Pseudomonas putida
90%
>0.999
Pseudomonas fluorescens
96%
>0.999
Pseudomonas taetrolens
89%
>0.999
Pseudomonas fragi
93%
>0.999
Pseudomonas syringae
95%
>0.999
Pseudomonas pseudoalcaligenes
93%
>0.999
Pseudomonas lundensis
93%
>0.999
Pseudomonas anguiliseptica
93%
>0.999
Cellvibrio gilvus
92%
>0.999
Acinetobacter baumannii
100–105%
>0.999
Arsenophonus nasoniae
87%
>0.998
Budvicia aquatica
88%
>0.999
Buttiauxella gaviniae
107%
>0.999
Cedecea davisae
97%
>0.999
Citrobacter freundii
95%
>0.999
Cronobacter sakazakii
96%
>0.999
Edwardsiella tarda
106%
>0.999
Enterobacter cloacae
89–111%
>0.999
Enterobacter aerogenes
107%
>0.998
Escherichia vulneris
93%
>0.999
Escherichia coli
91–96%
>0.999
Ewingella americana
97%
>0.999
Haemophilus influenzae
91–110%
>0.999
Hafnia alvei
93%
>0.999
Klebsiella oxytoca
93%
>0.999
Klebsiella pneumoniae
95–100%
>0.999
Kluyvera ascorbata
100%
>0.999
Leclercia adecarboxylata
93%
>0.999
Leminorella richardii
94%
>0.999
Moellerella wisconsensis
93%
>0.999
Moraxella catarrhalis
91–106%
>0.999
Morganella morganii
95%
>0.999
Obesumbacterium proteus
114%
>0.994
Pantoea agglomerans
93%
>0.999
Pectobacterium atrosepticum
90%
>0.999
Photorhabdus asymbiotica
96%
>0.999
Plesiomonas shigelloides
93%
>0.999
Pragia fontium
100%
>0.998
Proteus mirabilis
98%
>0.999
Providencia rustigianii
93%
>0.999
Rahnella aquatilis
92%
>0.999
Raoultella ornithinolytica
94%
>0.999
Salmonella enterica
101%
>0.999
Salmonella enterica subsp. enterica serovar gallinarum
95%
>0.998
Serratia liquefaciens
94%
>0.999
Shigella dysenteriae
98%
>0.999
Tatumella ptyseos
101%
>0.999
Trabulsiella guamensis
95%
>0.999
Yokenella regensburgei
96%
>0.999
Yersinia enterocolitica
98%
>0.999
Campylobacter jejuni
89%
>0.999
Vibrio cholerae
85%
>0.996
Borrelia burgdorferi
90%
>0.999
Treponema denticola 82% >0.999

*No 16 S rRNA gene sequence available in the Ribosomal Database Project.