Table 2. The percentage of matches with the reference genome (hg19) in different SCD bins.
SCD | The percentage of matches | Number of matches | Number of mismatches |
0 | 0.7250 | 13,422,373 | 5,090,948 |
1 | 0.9073 | 5,105,739 | 521,544 |
2 | 0.9413 | 2,365,912 | 147,471 |
3 | 0.9547 | 1,512,073 | 71,607 |
4 | 0.9618 | 1,113,180 | 44,209 |
5 | 0.9659 | 888,164 | 31,314 |
6 | 0.9708 | 739,542 | 22,216 |
7 | 0.9723 | 633,977 | 18,032 |
>7 | 0.9820 | 20,980,352 | 385,334 |