TABLE 6.
Contribution of residues to the pKa shifts of Asp-85 in BR and Asp-75 in ASR (relative to the bulk solvent) in the presence of the protonated Schiff base (in pKa units)
For clarity, residue pairs that are responsible for differences of <0.7 between pKa(Asp-85) and pKa(Asp-75) are not listed except for the Glu-204/Asp-198 pair. Side, side chain; bb, backbone.
BR (1C3W) | pKa(Asp-85) = 1.5 |
ASR (1XIO) | pKa (Asp-75) = −5.1 |
Difference total | ||||
---|---|---|---|---|---|---|---|---|
Side | bb | Total | Side | bb | Total | |||
Ile-52 | −0.1 | 0.0 | −0.1 | Trp-46 | −0.6 | −0.3 | −0.9 | 0.8 |
Ala-53 | 0.0 | −0.5 | −0.5 | Ser-47 | −2.6 | −0.6 | −3.2 | 2.7 |
Tyr-57 | −0.5 | −0.4 | −0.9 | Tyr-51 | 0.2 | −0.4 | −0.2 | −0.7 |
Arg-82 | −3.9 | 0.8 | −3.1 | Arg72 | −2.1 | 0.9 | −1.2 | −1.9 |
Glu-194 | 1.2 | −0.1 | 1.1 | Ser-188 | 0.0 | 0.0 | 0.0 | 1.1 |
Glu-204 | 0.0 | 0.1 | 0.1 | Asp-198 | 0.6 | 0.0 | 0.6 | −0.5 |
Asp-212 | 6.3 | −0.1 | 6.2 | Pro-206 | −0.1 | 6.3 | ||
Schiff | −9.3 | Schiff | −10.3 | 1.0 |