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. 2012 Aug 4;287(41):34009–34018. doi: 10.1074/jbc.M112.388348

TABLE 6.

Contribution of residues to the pKa shifts of Asp-85 in BR and Asp-75 in ASR (relative to the bulk solvent) in the presence of the protonated Schiff base (in pKa units)

For clarity, residue pairs that are responsible for differences of <0.7 between pKa(Asp-85) and pKa(Asp-75) are not listed except for the Glu-204/Asp-198 pair. Side, side chain; bb, backbone.

BR (1C3W) pKa(Asp-85) = 1.5
ASR (1XIO) pKa (Asp-75) = −5.1
Difference total
Side bb Total Side bb Total
Ile-52 −0.1 0.0 −0.1 Trp-46 −0.6 −0.3 −0.9 0.8
Ala-53 0.0 −0.5 −0.5 Ser-47 −2.6 −0.6 −3.2 2.7
Tyr-57 −0.5 −0.4 −0.9 Tyr-51 0.2 −0.4 −0.2 −0.7
Arg-82 −3.9 0.8 −3.1 Arg72 −2.1 0.9 −1.2 −1.9
Glu-194 1.2 −0.1 1.1 Ser-188 0.0 0.0 0.0 1.1
Glu-204 0.0 0.1 0.1 Asp-198 0.6 0.0 0.6 −0.5
Asp-212 6.3 −0.1 6.2 Pro-206 −0.1 6.3
Schiff −9.3 Schiff −10.3 1.0