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. 2012 Aug 15;287(41):34304–34315. doi: 10.1074/jbc.M112.398404

TABLE 1.

SAXS parameters for uPAR

RgautoRg and RgGNOM are the radii of gyration estimated from the SAXS data using the automated Guinier analysis routine and GNOM, respectively. Dmax, Vp, and MMSAXS are the maximum particle dimensions, hydrated particle volumes, and molecular masses estimated from I(0), respectively. Extracted parameters are taken from the merged SAXS curve from all data sets and extrapolated to infinite dilution, and the molecular masses calculated from the sequence (including four standard glycosylations) are shown (MMseq). The experimentally determined masses for the glycosylated uPARwt and uPARH47C/N259C preparations used in this study are both within 35.1–35.4 kDa, where the differences from the calculated masses most likely relate to incomplete fucosylations of the innermost chitobiose moieties of the glycans.

Protein RgautoRg RgGNOM Dmax Vp MMSAXS MMseq
nm nm nm nm3 kDa kDa
uPARwt 2.8 ± 0.1 2.9 ± 0.1 9.7 ± 0.5 69 ± 10 47 ± 5 35.6
uPARH47C/N259C 2.2 ± 0.1 2.2 ± 0.1 7.0 ± 0.5 57 ± 10 34 ± 5 35.6
uPARwt·AE105 2.5 ± 0.1 2.5 ± 0.1 8.5 ± 0.5 61 ± 5 37 ± 5 36.8
uPARwt·AE234 2.4 ± 0.1 2.4 ± 0.1 8.3 ± 0.5 57 ± 5 42 ± 5 36.9
uPARwt·ATF 2.8 ± 0.1 2.8 ± 0.1 9.4 ± 0.5 102 ± 10 58 ± 5 51.8