Table 1.
Comparison of ParticleCall with differentNp
| Method | Np | error rate | base-calling time (min) | |
|---|---|---|---|---|
| ParticleCall (via MCEM) |
400 |
0.0126 |
46 |
|
| |
800 |
0.0124 |
88 |
|
| |
1200 |
0.0124 |
130 |
|
| ParticleCall (via PFEM) |
400 |
0.0128 |
46 |
|
| |
800 |
0.0125 |
91 |
|
| |
1200 |
0.0125 |
133 |
|
| Rao-Blackwellized ParticleCall (via MCEM) |
100 |
0.0128 |
103 |
|
| |
200 |
0.0125 |
190 |
|
| |
300 |
0.0124 |
287 |
|
| 400 | 0.0124 | 386 |
ParticleCall is run using parameters obtained via the MCEM parameter estimation scheme as well as via the PFEM parameter estimation algorithm proposed in this paper. Rao-Blackwellized ParticleCall is run using parameters via the MCEM parameter estimation scheme.