Table 4.
de novo assembly results
| |
|
|
|
|
|
|
|
|
ParticleCall |
ParticleCall |
||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Coverage |
Bustard |
Rolexa |
naiveBayesCall |
BayesCall |
via MCEM |
via PFEM |
||||||
| N50 | Max | N50 | Max | N50 | Max | N50 | Max | N50 | Max | N50 | Max | |
| 5X |
271 |
607 |
259 |
565 |
278 |
604 |
292 |
629 |
299 |
637 |
289 |
632 |
| 10X |
1169 |
1750 |
971 |
1557 |
1180 |
1731 |
1269 |
1831 |
1316 |
1900 |
1341 |
1865 |
| 15X |
3624 |
3823 |
2885 |
3170 |
3726 |
3908 |
3466 |
3741 |
3742 |
3935 |
3697 |
3918 |
| 20X | 4694 | 4744 | 4529 | 4614 | 4756 | 4816 | 4827 | 4875 | 5102 | 5116 | 4795 | 5039 |
The maximum contig length and N50 length of de novo assembly using Velvet. The average values over 200 experiments are shown in the table.