Table 6.
Number of errors for simulated data
| Space | Probe | Percentage | Percentage mapped with 0 – 5 errors | |||||
|---|---|---|---|---|---|---|---|---|
| |
generator |
mapped |
0 |
1 |
2 |
3 |
4 |
5 |
| Color |
None |
77.1 |
38.4 |
16.7 |
10.5 |
6.2 |
3.6 |
1.8 |
| 1β0β0 |
78.4 |
48.6 |
10.2 |
9.7 |
5.0 |
3.2 |
1.7 |
|
| 10β00 |
78.3 |
48.4 |
10.3 |
9.7 |
5.0 |
3.2 |
1.7 |
|
| 1β010 |
78.3 |
49.8 |
9.1 |
9.7 |
4.9 |
3.2 |
1.7 |
|
| Base |
None |
47.2 |
38.4 |
2.3 |
1.6 |
1.8 |
1.8 |
1.2 |
| 1β0β0 |
64.3 |
49.6 |
4.7 |
2.1 |
3.1 |
2.6 |
2.1 |
|
| 10β00 |
65.5 |
49.4 |
6.2 |
3.0 |
2.3 |
2.4 |
2.2 |
|
| 1β010 | 64.9 | 50.8 | 5.0 | 2.2 | 2.4 | 2.4 | 2.2 |
Percentage of reads mapped (five edits or fewer), and mapped with a given number of errors, for one million simulated reads using the codes with probe generators as specified. For comparison, figures are also given using only the two-base-encoding probe set (probe generator ‘None’). Since color-space reads have their first position trimmed before mapping to produce reads 49 colors long, the percentages of mapped reads and reads with a given number of errors are slightly inflated compared to those given for base-space reads.