Table 1. Number of paired end reads from the Illumina HiSeq sequencing and the percentage of reads mapped to the Cx. quinquefasciatus (strain: Johannesburg) predicted transcriptome.

Mosquito strain	HAmCqG0	HAmCqG8
Total reads	32540882†	37184673
Additional reads discarded	31509‡	16219
Reads mapped	23008772	30586459

^†Total number of FASTQ (DNA sequence with quality scores) reads passing the Illumina quality filter.

^‡Number of reads discarded due to low quality of one or both of the paired end reads.