Table 2. Numbers of differentially-expressed genes and their cumulative gene expression level in HAmCq^G8 sorted by the Structural Classification Of Proteins general function category.

	Down-regulated†		Up-regulated
SCOP‡ general function category	#genes	FPKM* range (cumulative)	#genes	FPKM range (cumulative)
Extra-cellular processes	101	0.1–126.4 (1.29×103)	20	1.0–121.8 (5.42×102)
General	355	0.1–192.1 (4.31×103)	39	1.0–1750.5 (5.99×104)
Information	171	0.1–344.9 (3.68×103)	5	4.3–66.0 (1.05×102)
Intra-cellular processes	359	0.1–255.4 (5.18×103)	58	1.7–5763.6 (1.28×104)
Metabolism	397	0.1–737.5 (1.15×104)	91	1.1–47162.3 (1.02×105)
NONA§	2016	0.0–33037.0 (1.10×105)	125	1.0–5766.3 (2.62×104)
Other	57	0.6–167.1 (1.26×103)	5	7.5–1742.1 (3.76×103)
Regulation	526	0.0–584.3 (5.56×103)	24	1.5–865.9 (1.25×103)
TOTAL	3982	(1.43×105)	367	(1.53×105)

^†Down-regulated/Up-regulated genes represent those genes that differed in their expression level (FPKM) in HAmCq^G8 by more than two fold when compared to the parental strain HAmCq^G0.

^‡SCOP general function categories annotated using the predicted Cx. quinquefasciatus annotation information available at the Superfamily website (version 1.75) supfam.cs.bris.ac.uk/SUPERFAMILY/index.html.

^*Fragments mapped Per Kilo bases of reference sequence for every Million fragments sequenced.

^§NONA: Not annotated.