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. 2012 Oct 5;7(10):e46420. doi: 10.1371/journal.pone.0046420

Table 2. Most abundant bacterial OTUs negatively associated with fresh peach shoot weights.

OTU designation Nearest cultured relative (accession) (% identity)a Nearest uncultured relative accession (% identity)a Abundance (% of total reads) Correlation coefficient (rb) Probability (P)
278666 Hydrogenophaga flava (AB681848) (98%) HQ120802 (98%) 0.094 −0.687 0.000
243054 Aquabacterium sp. (FN692032) (98%) HE583131 (98%) 0.082 −0.686 0.000
61 Cupriavidus sp. (AB681843) (100%) HQ783640 (100%) 0.042 −0.626 0.000
35800 Pseudogulbenkiania sp. (AP012224) (98%) AB657767 (98%) 0.059 −0.611 0.000
26781 Pseudomonas pachastrellae (HQ425676) (94%) FJ568592 (100%) 0.198 −0.567 0.000
129755 Bacterium MI-37 (AB529705) (95%) FJ568592 (97%) 0.065 −0.561 0.000
172482 Azoarcus sp. (AP012304) (100%) JN825463 (100%) 0.088 −0.554 0.001
234080 Azoarcus sp. (AP012304) (96%) JN825463 (96%) 0.032 −0.551 0.001
250441 Thiocystis violacea (FN293059) (95%) JF990363 (98%) 0.111 −0.530 0.002
115618 Pseudomonas fluorescens (JN411289) (98%) AB579016 (98%) 0.128 −0.520 0.002
273727 Pseudomonas putida (JN411453) (96%) AB579016 (96%) 0.037 −0.503 0.003
210082 Dechloromonas sp. (GU202936) (100%) GU179639 (100%) 0.044 −0.493 0.004
193280 Pseudomonas sp. (HE586886) (100%) JQ032435 (100%) 0.023 −0.484 0.005
236351 Rahnella aquatilis (JQ014185) (100%) JN998890 (100%) 0.036 −0.481 0.005
288392 Ramlibacter sp. (HQ323427) (98%) FQ690103 (98%) 0.181 −0.468 0.007
184527 Rhizobacter sp. (HE616175) (100%) FQ659876 (100%) 0.065 −0.458 0.008
244218 Methylophaga thalassica (AB681780) (95%) HQ697540 (100%) 0.041 −0.427 0.015
207860 Pseudomonas taiwanensis (JQ014182) (100%) HE650703 (100%) 0.059 −0.415 0.018
273656 Methylobacillus sp. (EU194898) (97%) FQ659555 (98%) 0.155 −0.405 0.022
17162 Bradyrhizobium sp. (HQ836187) (98%) JN540015 (98%) 0.259 −0.387 0.029
167695 Methylophilus leisingeri (NR_041258) (100%) AB635923 (100%) 0.071 −0.387 0.029
246943 Pseudomonas sp. (FN995250) (94%) FQ659619 (97%) 0.536 −0.374 0.035
166091 Woodsholea maritima (FM886859) (97%) HE614733 (99%) 0.062 −0.368 0.038
234039 Terrimonas lutea (NR_041250) (100%) FQ706675 (100%) 0.060 −0.367 0.040
11757 Thiocystis violacea (FN293059) (97%) FR853185 (99%) 0.046 −0.361 0.042
164910 Pseudomonas sp. (FN995250) (92%) FQ659619 (95%) 0.110 −0.361 0.042
32731 Cellvibrio japonicus (CP000934) (99%) HQ691969 (98%) 0.119 −0.360 0.043
a

% identity values are from analyses using BLAST (NCBI) where coverage was at least 96%.

b

r is the Pearson's correlation coefficient.