Table 1. Results of AU and SH topology tests for subfamily Salmoninae and genus Oncorhynchus for different data sets; alternative topologies with significant likelihood values are shown in bold.
Salmoninae | MitoNuc-NT | MitoNuc-RY | MitoNuc25-NT | MitoNuc25-RY | |||||
CONSTRAINT | AU | SH | AU | SH | AU | SH | AU | SH | |
1 | (Salmonidae,(Salmo,(Parahucho,(Salvelinus,Oncorhynchus)))) | 0.984 | 0.999 | 0.920 | 0.987 | 0.977 | 1.000 | 0.930 | 0.990 |
2 | (Salmonidae,(Salmo,(Oncorhynchus,(Parahucho,Salvelinus)))) | 0.042 | 0.184 | 0.214 | 0.304 | 0.069 | 0.246 | 0.196 | 0.290 |
3 | (Salmonidae,(Salmo,(Salvelinus,(Parahucho,Oncorhynchus)))) | 0.000 | 0.031 | 0.001 | 0.059 | 0.000 | 0.043 | 0.000 | 0.063 |
4 | (Salmonidae,(Parahucho,(Salvelinus,(Salmo,Oncorhynchus)))) | 0.000 | 0.000 | 0.001 | 0.007 | 0.000 | 0.000 | 0.002 | 0.009 |
5 | (Salmonidae,(Parahucho,(Oncorhynchus,(Salmo,Salvelinus)))) | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 | 0.000 | 0.000 | 0.002 |
6 | (Salmonidae,(Parahucho,(Salmo,(Salvelinus,Oncorhynchus)))) | 0.011 | 0.358 | 0.129 | 0.555 | 0.013 | 0.340 | 0.118 | 0.544 |
7 | (Salmonidae,(Salvelinus,(Parahucho,(Salmo,Oncorhynchus)))) | 0.000 | 0.000 | 0.001 | 0.007 | 0.000 | 0.000 | 0.000 | 0.008 |
8 | (Salmonidae,(Salvelinus,(Oncorhynchus,(Parahucho,Salmo)))) | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 | 0.000 | 0.000 | 0.002 |
9 | (Salmonidae,(Salvelinus,(Salmo,(Parahucho,Oncorhynchus)))) | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 | 0.000 | 0.001 | 0.002 |
10 | (Salmonidae,(Oncorhynchus,(Salmo,(Parahucho,Salvelinus)))) | 0.000 | 0.001 | 0.013 | 0.059 | 0.000 | 0.002 | 0.007 | 0.045 |
11 | (Salmonidae,(Oncorhynchus,(Salvelinus,(Parahucho,Salmo)))) | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 | 0.000 | 0.000 | 0.002 |
12 | (Salmonidae,(Oncorhynchus,(Parahucho,(Salmo,Salvelinus)))) | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 | 0.000 | 0.001 | 0.002 |
13 | (Salmonidae,((Oncorhynchus,Parahucho),(Salmo,Salvelinus))) | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 | 0.000 | 0.001 | 0.002 |
14 | (Salmonidae,((Oncorhynchus,Salvelinus),(Parahucho,Salmo))) | 0.040 | 0.392 | 0.129 | 0.555 | 0.029 | 0.361 | 0.121 | 0.544 |
15 | (Salmonidae,((Parahucho,Salvelinus),(Salmo,Oncorhynchus))) | 0.001 | 0.002 | 0.050 | 0.072 | 0.003 | 0.006 | 0.052 | 0.068 |
Abbreviations in Oncorhynchus: Trout = (O. apache, O. chrysogaster, O. clarkii, O. gilae, O. mykiss); Ki/T = (O. kisutch, O. tshawytscha); Masou = (O. masou, O. rhodurus); N/Ke/G = (O. nerka, O. keta, O. gorbuscha).