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. 2012 Oct 5;7(10):e46662. doi: 10.1371/journal.pone.0046662

Table 1. Results of AU and SH topology tests for subfamily Salmoninae and genus Oncorhynchus for different data sets; alternative topologies with significant likelihood values are shown in bold.

Salmoninae MitoNuc-NT MitoNuc-RY MitoNuc25-NT MitoNuc25-RY
CONSTRAINT AU SH AU SH AU SH AU SH
1 (Salmonidae,(Salmo,(Parahucho,(Salvelinus,Oncorhynchus)))) 0.984 0.999 0.920 0.987 0.977 1.000 0.930 0.990
2 (Salmonidae,(Salmo,(Oncorhynchus,(Parahucho,Salvelinus)))) 0.042 0.184 0.214 0.304 0.069 0.246 0.196 0.290
3 (Salmonidae,(Salmo,(Salvelinus,(Parahucho,Oncorhynchus)))) 0.000 0.031 0.001 0.059 0.000 0.043 0.000 0.063
4 (Salmonidae,(Parahucho,(Salvelinus,(Salmo,Oncorhynchus)))) 0.000 0.000 0.001 0.007 0.000 0.000 0.002 0.009
5 (Salmonidae,(Parahucho,(Oncorhynchus,(Salmo,Salvelinus)))) 0.000 0.000 0.000 0.003 0.000 0.000 0.000 0.002
6 (Salmonidae,(Parahucho,(Salmo,(Salvelinus,Oncorhynchus)))) 0.011 0.358 0.129 0.555 0.013 0.340 0.118 0.544
7 (Salmonidae,(Salvelinus,(Parahucho,(Salmo,Oncorhynchus)))) 0.000 0.000 0.001 0.007 0.000 0.000 0.000 0.008
8 (Salmonidae,(Salvelinus,(Oncorhynchus,(Parahucho,Salmo)))) 0.000 0.000 0.000 0.003 0.000 0.000 0.000 0.002
9 (Salmonidae,(Salvelinus,(Salmo,(Parahucho,Oncorhynchus)))) 0.000 0.000 0.000 0.003 0.000 0.000 0.001 0.002
10 (Salmonidae,(Oncorhynchus,(Salmo,(Parahucho,Salvelinus)))) 0.000 0.001 0.013 0.059 0.000 0.002 0.007 0.045
11 (Salmonidae,(Oncorhynchus,(Salvelinus,(Parahucho,Salmo)))) 0.000 0.000 0.000 0.003 0.000 0.000 0.000 0.002
12 (Salmonidae,(Oncorhynchus,(Parahucho,(Salmo,Salvelinus)))) 0.000 0.000 0.000 0.003 0.000 0.000 0.001 0.002
13 (Salmonidae,((Oncorhynchus,Parahucho),(Salmo,Salvelinus))) 0.000 0.000 0.000 0.003 0.000 0.000 0.001 0.002
14 (Salmonidae,((Oncorhynchus,Salvelinus),(Parahucho,Salmo))) 0.040 0.392 0.129 0.555 0.029 0.361 0.121 0.544
15 (Salmonidae,((Parahucho,Salvelinus),(Salmo,Oncorhynchus))) 0.001 0.002 0.050 0.072 0.003 0.006 0.052 0.068

Abbreviations in Oncorhynchus: Trout = (O. apache, O. chrysogaster, O. clarkii, O. gilae, O. mykiss); Ki/T = (O. kisutch, O. tshawytscha); Masou = (O. masou, O. rhodurus); N/Ke/G = (O. nerka, O. keta, O. gorbuscha).