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. 2012 Sep 1;11(17):3331–3338. doi: 10.4161/cc.21790

Table 1. Sequences of oligonucleotides.

name sequence length1
[bp]
amount/
concentrations
UPL2 number
Electric Mobility Shift Assay (EMSA)
TBE3
ATTATTTCAAAACAAAGGTTTACAGAAA
 
 
 
TBE4
GAGTTACCCTCCTTTGATATTTTCTGTA
 
 
 
MUT3
ATTATTTCAACGCAGAGGTTTACAGAAA
 
 
 
MUT4
GAGTTACCCTCCTGTGCGATTTTCTGTA
 
 
 
c-Myc CTAGCGCACCTTTGATTTCTGCACCTTTGATTTCTG      
Chromatin immunoprecipitation (ChIP)
hTERT
ACTCGCGCTGCCCTTCTAGC
ACGGTGTATCCCCAGTCTACGAAG
617
400 nM
400 nM
 
c-Myc
ACAGACGCCTCCCGCACGGG
CCACACCGAGAACGCACTGC
451
400 nM
400 nM
 
GAPDH TACTAGCGGTTTTACGGGCG
TCGAACAGGAGGAGCAGAGAGCGA
165 400 nM
400 nM
 
RNA interference (RNAi)
β-catenin
CAGUUGUGGUUAAGCUCUUdTdT
 
60 nM
 
GFP AAGCUACCUGUUCCAUGGCCAdTT   60 nM  
RT-qPCR
β-catenin
AGCTGACCAGCTCTCTCTTCA
CCAATATCAAGTCCAAGATCAGC
73
900 nM
900 nM
21
c-Myc
CACCAGCAGCGACTCTGA
GATCCAGACTCTGACCTTTTGC
102
300 nM
300 nM
34
hTERT
CACGCGAAACCTTCCTC
ACCACTGTCTTCCGCAAGTT
80
300 nM
900 nM
46
HPRT1 TGACCTTGATTTATTTTGCATACC
CGAGCAAGACGTTCAGTCCT
102 900 nM
900 nM
73

1 Length of amplicons resulting from gene specific PCRs.2 UPL (universal probe library) given are the numbers of the probes of the UPL (Roche). In the EMSA probes TBE sequences are underlined.