Table 1. Sequences of oligonucleotides.
Electric Mobility Shift Assay (EMSA) | ||||
---|---|---|---|---|
TBE3 |
ATTATTTCAAAACAAAGGTTTACAGAAA |
|
|
|
TBE4 |
GAGTTACCCTCCTTTGATATTTTCTGTA |
|
|
|
MUT3 |
ATTATTTCAACGCAGAGGTTTACAGAAA |
|
|
|
MUT4 |
GAGTTACCCTCCTGTGCGATTTTCTGTA |
|
|
|
c-Myc | CTAGCGCACCTTTGATTTCTGCACCTTTGATTTCTG |
Chromatin immunoprecipitation (ChIP) | ||||
---|---|---|---|---|
hTERT |
ACTCGCGCTGCCCTTCTAGC ACGGTGTATCCCCAGTCTACGAAG |
617 |
400 nM 400 nM |
|
c-Myc |
ACAGACGCCTCCCGCACGGG CCACACCGAGAACGCACTGC |
451 |
400 nM 400 nM |
|
GAPDH | TACTAGCGGTTTTACGGGCG TCGAACAGGAGGAGCAGAGAGCGA |
165 | 400 nM 400 nM |
RNA interference (RNAi) | ||||
---|---|---|---|---|
β-catenin |
CAGUUGUGGUUAAGCUCUUdTdT |
|
60 nM |
|
GFP | AAGCUACCUGUUCCAUGGCCAdTT | 60 nM |
RT-qPCR | ||||
---|---|---|---|---|
β-catenin |
AGCTGACCAGCTCTCTCTTCA CCAATATCAAGTCCAAGATCAGC |
73 |
900 nM 900 nM |
21 |
c-Myc |
CACCAGCAGCGACTCTGA GATCCAGACTCTGACCTTTTGC |
102 |
300 nM 300 nM |
34 |
hTERT |
CACGCGAAACCTTCCTC ACCACTGTCTTCCGCAAGTT |
80 |
300 nM 900 nM |
46 |
HPRT1 | TGACCTTGATTTATTTTGCATACC CGAGCAAGACGTTCAGTCCT |
102 | 900 nM 900 nM |
73 |
1 Length of amplicons resulting from gene specific PCRs.2 UPL (universal probe library) given are the numbers of the probes of the UPL (Roche). In the EMSA probes TBE sequences are underlined.