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. 2012 Oct 8;7(10):e46821. doi: 10.1371/journal.pone.0046821

Figure 2. Phylogeny of Mycoplasma mycoides subsp. mycoides “Small Colony” (MmmSC) inferred by the maximum likelihood method.

Figure 2

The maximum likelihood tree was reconstructed using PhyML (GTR with invariable sites) based on the alignment of 62 concatenated core genes of MmmSC. Bootstrap values >80% are shown. Strain names are colored according to the sampling location (see Figure 1). Country codes are indicated in brackets. The branch corresponding to the outgroup (GM12) was shortened, as indicated by two parallel bars. The scale indicates the number of substitutions per site. Abbreviations: AU = Australia; CM = Cameroon; ES = Spain; ER = Eritrea; ET = Ethiopia; FR = France; GN = Guinea; IN = India; IT = Italy; ML = Mali; PT = Portugal; RW = Rwanda; SD = Sudan; TZ = Tanzania; ZM = Zambia.