Table 5. Selected^a differentially expressed genes identified using RNAseq^b.

Patient	Gene	ln (fold change)	q-value (corrected)	Patient	Gene	ln (fold change)	q-value (corrected)
2	AKT3	−4.37	2.92E-03	3	ABL1	5.51	5.50E-03
2	ATM	−3.84	2.25E-02	3	AKT2	4.42	4.52E-02
2	ATRX	−3.19	4.89E-02	3	ATRX	−5.32	3.12E-05
2	ATRX	−5.68	5.53E-06	3	BCL3	4.43	4.40E-03
2	BCL3	4.42	4.77E-03	3	BCL3	3.93	1.40E-02
2	BCL3	4.25	1.05E-02	3	BIRC3	6.64	2.06E-07
2	BIRC3	5.86	1.67E-05	3	BRCA1	5.22	2.58E-04
2	BRCA2	3.48	2.31E-02	3	CDH1	−3.38	1.93E-02
2	CBLB	4.54	1.74E-03	3	CDH11	5.94	1.10E-03
2	COL1A1	3.42	3.88E-02	3	CREBBP	3.94	4.65E-03
2	CREB1	3.75	1.79E-02	3	DNM2	−3.27	4.73E-02
2	ERBB2	3.96	1.39E-02	3	EML4	−3.26	1.87E-02
2	ERBB4	−5.98	4.53E-08	3	ERCC4	−4.05	2.27E-03
2	ERCC4	−5.50	1.37E-05	3	FGFR1	−2.98	4.97E-02
2	FGFR1	−4.56	1.17E-02	3	FSTL3	4.23	5.35E-03
2	FGFR1	−6.44	4.06E-02	3	GOLGA5	−2.82	4.28E-02
2	FLT3	−4.82	3.02E-03	3	HERPUD1	−3.21	1.67E-02
2	FLT3	−4.94	2.17E-03	3	IL7R	−4.38	2.09E-03
2	FOXP1	−3.23	3.85E-02	3	KRAS	4.35	1.61E-03
2	FUS	3.89	1.16E-02	3	MAML2	3.47	3.65E-02
2	GNAS	−3.81	5.77E-03	3	MDM4	−3.22	2.03E-02
2	GSK3B	3.33	1.60E-03	3	MLH1	4.12	6.01E-03
2	HERPUD1	−4.86	1.40E-04	3	MLL3	2.99	4.69E-02
2	KTN1	−3.84	5.91E-03	3	MLL3	−3.13	1.86E-02
2	MAML2	3.45	4.62E-02	3	MLLT6	3.08	3.75E-02
2	MLL3	3.46	1.77E-02	3	NDRG1	4.05	3.35E-03
2	MLL3	−3.47	6.01E-03	3	NFIIB	−3.10	3.29E-02
2	NDRG1	5.71	2.73E-05	3	NOTCH2	4.12	7.57E-03
2	NFIIB	−3.23	2.54E-02	3	PALB2	4.41	5.20E-03
2	NFIIB	−3.43	1.17E-02	3	PICALM	3.28	3.40E-02
2	PIM1	4.90	1.42E-03	3	PIM1	3.84	2.57E-02
2	PPARG	3.82	3.95E-02	3	PPARG	4.44	2.54E-02
2	PRDM1	4.36	3.80E-03	3	REG4	6.92	2.04E-07
2	PRDM1	3.66	2.19E-02	3	REG4	6.49	5.05E-07
2	REG4	4.57	1.85E-03	3	REG4	4.77	3.84E-04
2	REG4	3.43	1.76E-02	3	RUNX1	3.61	8.25E-03
2	RUNX1	3.92	6.18E-03	3	TOP2A	8.99	2.97E-04
2	SET	4.04	6.85E-03	3	TOP2A	8.30	1.24E-03
2	SOX2	3.57	2.75E-02	3	TPM4	3.99	8.54E-03
2	TFPT	3.87	1.21E-02
2	TFRC	4.71	6.57E-04
2	TOP2A	9.15	2.05E-04
2	TP53	4.24	5.10E-03
2	TPM4	4.24	3.63E-03
2	ZNF384	−5.56	1.57E-05

^aSelected genes are genes that are reported in COSMIC.

^bRNAseq was performed on patients 2 and 3.