Table 4.
Contigs assembled for the low sequence coverage putative conjugative plasmid.
| Contig | Size (bp) | Matching spacers | Unique spacers | Forward/reverse | ORFs | Orf match | e value | Putative function |
|---|---|---|---|---|---|---|---|---|
| 1 | 7277 | 151 | 125 | 60/65 | 200 | pARN3_06 | 7e_62 | Conserved plasmid |
| 472 | pARN3_05 | 0.0 | Membrane protein | |||||
| 622 | pAH1_04 | 0.0 | TrbE-like | |||||
| 223 | pARN3_02 | 2e_85 | Conserved plasmid | |||||
| 712 | pARN3_01 | 0.0 | Conserved plasmid | |||||
| 2 | 6723 | 141 | 123 | 66/57 | 192 | pAH1_09 | 1e_50 | Membrane protein |
| 182 | pAH1_p11 | 2e_93 | Membrane protein | |||||
| 132 | pARN3_10 | 2e_55 | Conserved plasmid | |||||
| 1029 | pAH1_p13 | 0.0 | TraG-like | |||||
| 3 | 2469 | 63 | 50 | 21/29 | 95 (Nter.) | pNOB8_19 | 2e_33 | Conserved plasmid |
| 93 | pNOB8_18 | 2e_09 | Conserved plasmid | |||||
| 196 | pARN3_21 | 2e_45 | Conserved plasmid | |||||
| 174 | pSOG1_16 | 1e_11 | DNA binding | |||||
| 4 | 2003 | 20 | 19 | 12/7 | 95 | pAH1_31 | 1e_54 | Conserved plasmid |
| 91 | pKEF9_29 | 2e_29 | Conserved plasmid | |||||
| 71 | pSOG1_27 | 1e_21 | Conserved plasmid | |||||
| 94 | pNOB8_01 | 0.030 | Conserved plasmid | |||||
| 158 | pAH1_23 | 1e_63 | Conserved plasmid | |||||
| 5 | 1780 | 31 | 25 | 17/8 | 435 | pHVE14_20,21 | 0.0 | OrfA/B IS200/605 |
| 6 | 1426 | 17 | 16 | 8/8 | 83 | pHVE14_41 | 8e_44 | PlrA protein |
| 228 | M. sedula Msed_2202 | 3e_161 | Unnamed protein | |||||
| 7 | 1314 | 14 | 11 | 7/4 | 361 (Cter.) | pKEF9_31 | 0.0 | Integrase |
| 8 | 412 | 10 | 7 | 4/3 | 102 | pARN3_15 | 6e_22 | Conserved plasmid |
| 9 | 185 | 9 | 8 | 5/3 | partial | A. hospitalis Ahos_0414 | 2e_84 | Transporter Orf393 |
| 10 | 152 | 23 | 21 | 12/9 | partial | Ahos_0414 | 8e_18 | Transporter Orf393 |
The sizes are given together with the number and directions of the matching spacers. The best sequence matches to the predicted contig ORFs are given together with their expectancy values.