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. 2012 Jul 1;2(4):179–183. doi: 10.4161/mge.21943

Table 1.Can. S. usitatus Ellin6076 genes associated with mobile elements and their presence in other acidobacteria genomes.

Type Function/Domain Family Number Family found in other acidobacteria genomes?
 
 
 
 
A. capsulatum
Can. K. versatilis
G. mallensis
G. tundricola
T. saanensis
Can. C. thermophilum
phage integrase family protein
COG4974 Site-specific recombinase XerD
lambda integrase
27
yes
yes
yes
yes
yes
yes
integrase catalytic region
pfam00665 rve
NA
37
yes
yes
yes
yes
yes
no
transposase IS3/IS911 family protein
Pfam01527 transposase_8
IS3
16
yes
no
no
yes
no
no
transposase IS204/IS1001/IS1096/IS1165
COG3464 Transposase and inactivated derivatives
pfam01610 Transposase_12
ISL3
2
no
no
no
yes
yes
no
putative transposase protein Y4bF
pfam01548 Transposase_9
pfam02371 Transposase_20
NA
4
yes
yes
yes
yes
yes
no
IS116/IS110/IS902
 
IS110
20
yes
yes
yes
yes
yes
no
transposase IS66
pfam03050 Transposase_25
COG2251 Predicted nuclease (RecB family)
IS66
4
no
no
no
no
no
no
transposase
transposase_11
pfam01609
NA
1
yes
no
yes
yes
no
no
transposase
NA
NA
4
no
no
no
no
no
no
putative transposase
NA
NA
7
no
no
no
yes
no
no
transposase-like NA NA 1 no no no no no no

Data presented in this table were obtained from BLAST 45 analysis, the Integrated Microbial Genomes (IMG) System 35, and the references that describe the genomes 16, 22, 28, 34.