Table 1.Can. S. usitatus Ellin6076 genes associated with mobile elements and their presence in other acidobacteria genomes.
Type | Function/Domain | Family | Number | Family found in other acidobacteria genomes? | |||||
---|---|---|---|---|---|---|---|---|---|
|
|
|
|
A. capsulatum |
Can. K. versatilis |
G. mallensis |
G. tundricola |
T. saanensis |
Can. C. thermophilum |
phage integrase family protein |
COG4974 Site-specific recombinase XerD |
lambda integrase |
27 |
yes |
yes |
yes |
yes |
yes |
yes |
integrase catalytic region |
pfam00665 rve |
NA |
37 |
yes |
yes |
yes |
yes |
yes |
no |
transposase IS3/IS911 family protein |
Pfam01527 transposase_8 |
IS3 |
16 |
yes |
no |
no |
yes |
no |
no |
transposase IS204/IS1001/IS1096/IS1165 |
COG3464 Transposase and inactivated derivatives pfam01610 Transposase_12 |
ISL3 |
2 |
no |
no |
no |
yes |
yes |
no |
putative transposase protein Y4bF |
pfam01548 Transposase_9 pfam02371 Transposase_20 |
NA |
4 |
yes |
yes |
yes |
yes |
yes |
no |
IS116/IS110/IS902 |
|
IS110 |
20 |
yes |
yes |
yes |
yes |
yes |
no |
transposase IS66 |
pfam03050 Transposase_25 COG2251 Predicted nuclease (RecB family) |
IS66 |
4 |
no |
no |
no |
no |
no |
no |
transposase |
transposase_11 pfam01609 |
NA |
1 |
yes |
no |
yes |
yes |
no |
no |
transposase |
NA |
NA |
4 |
no |
no |
no |
no |
no |
no |
putative transposase |
NA |
NA |
7 |
no |
no |
no |
yes |
no |
no |
transposase-like | NA | NA | 1 | no | no | no | no | no | no |
Data presented in this table were obtained from BLAST 45 analysis, the Integrated Microbial Genomes (IMG) System 35, and the references that describe the genomes 16, 22, 28, 34.