Table 2. OrbId prediction set for select TE-derived human miRs. “miR Name” refers to miRBase2 annotation while “Ensembl Gene ID” and “Gene Name” were obtained using the Biomart mining utility37. “Diana, TS” refers to whether a predicted target is contained within publically accessible Diana (D) and TargetScan (TS) predictions17,21. “Region” refers to the location of a predicted target site within a given mRNA. MiR-28–5p corresponds to the participating member of the miR-28 family. MiR-1254–1 is a member of the Alu-miR family. MiR-603 is a member of the miR-548 family.
| miR Name | Ensembl Gene ID | Gene Name | DIANA, TS | Region |
|---|---|---|---|---|
| hsa-mir-28–5p |
ENSG00000164136 |
IL15 |
|
5′ UTR |
| |
ENSG00000180957 |
PITPNB |
|
5′ UTR |
| |
ENSG00000108309 |
RUNDC3A |
|
3′ UTR |
| |
ENSG00000106608 |
URGCP |
D,TS |
3′ UTR |
| |
ENSG00000122741 |
DCAF10 |
D,TS |
3′ UTR |
| |
ENSG00000144043 |
TEX261 |
D,TS |
3′ UTR |
| |
ENSG00000152578 |
GRIA4 |
D,TS |
3′ UTR |
| |
ENSG00000134046 |
MBD2 |
|
3′ UTR |
| |
ENSG00000117598 |
LPPR5.1 |
D,TS |
3′ UTR |
| |
ENSG00000124466 |
LYPD3 |
D,TS |
3′ UTR |
| |
ENSG00000102921 |
N4BP1 |
D,TS |
3′ UTR |
| |
ENSG00000169016 |
E2F6 |
D,TS |
3′ UTR |
| |
ENSG00000135999 |
EPC2 |
D |
3′ UTR |
| |
ENSG00000123472 |
ATPAF1 |
D,TS |
3′ UTR |
| |
ENSG00000116641 |
DOCK7 |
|
3′ UTR |
| hsa-mir-301a5p |
ENSG00000105856 |
HBP1 |
D |
5′ UTR |
| |
ENSG00000175445 |
LPL |
|
ORF |
| |
ENSG00000082175 |
PGR |
|
ORF |
| |
ENSG00000166004 |
KIAA1731 |
|
ORF |
| |
ENSG00000136573 |
BLK |
|
ORF |
| hsa-mir-544a |
ENSG00000144560 |
VGLL4 |
D,TS |
5′ UTR |
| |
ENSG00000140632 |
GLYR1 |
|
ORF |
| |
ENSG00000078018 |
MAP2 |
D,TS |
ORF |
| |
ENSG00000197279 |
ZNF165 |
|
ORF |
| |
ENSG00000130066 |
SAT1 |
|
ORF |
| |
ENSG00000183035 |
CYLC1 |
|
ORF |
| |
ENSG00000142178 |
SIK1 |
|
ORF |
| |
ENSG00000173681 |
CXorf23 |
|
3′ UTR |
| hsa-mir-603 |
ENSG00000122692 |
SMU1 |
|
3′ UTR |
| |
ENSG00000102781 |
KATNAL1 |
D,TS |
3′ UTR |
| |
ENSG00000116205 |
TCEANC2 |
|
3′ UTR |
| |
ENSG00000004468 |
CD38 |
|
3′ UTR |
| |
ENSG00000226264 |
HLA-DMB |
|
3′ UTR |
| |
ENSG00000183908 |
LRRC55 |
|
3′ UTR |
| |
ENSG00000184040 |
FAM23B.1 |
|
3′ UTR |
| |
ENSG00000148483 |
TMEM236 |
|
3′ UTR |
| |
ENSG00000132623 |
ANKRD5 |
|
3′ UTR |
| |
ENSG00000144455 |
SUMF1 |
|
3′ UTR |
| |
ENSG00000215020 |
AL591684.1 |
|
3′ UTR |
| |
ENSG00000215033 |
AL603965.1 |
|
3′ UTR |
| hsa-mir-1254–1 |
ENSG00000081760 |
AACS |
|
5′ UTR |
| |
ENSG00000167077 |
MEI1 |
|
5′ UTR |
| |
ENSG00000238035 |
AC138035.1 |
|
5′ UTR |
| ENSG00000160991 | ORAI2 | 3′ UTR |