Table 4. Number of CpG % methylation values showing agreement or not (within 10%), between processed Infinium 450K and RRBS data (Nreads ≥ 4), at different % methylation value ranges.
| Infinium β value range |
Difference < 10% |
Difference > 10% |
Total | Median absolute difference | Standard deviation of absolute difference |
|---|---|---|---|---|---|
|
x ≤ 20% |
257,897 |
14,671 |
272,568 |
2.00 |
3.96 |
| |
95% |
5% |
|
|
|
|
20% < x ≤ 80% |
29,573 |
46,720 |
76,293 |
13.24 |
12.44 |
| |
39% |
61% |
|
|
|
|
80% < x ≤ 100% |
82,855 |
22,944 |
105,799 |
4.94 |
9.31 |
| 78% | 22% |