Table 6. Examples of cross-ontology rules mined from the chicken dataset.

Antecedent	GO Term Name	Consequent	GO Term Name	Cross-Ontology Category
GO:0005901	caveola	GO:0031325	positive regulation of cellular metabolic process	CC → BP
GO:0005929	cilium	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	CC → BP
GO:0015491	cation:cation antiporter activity	GO:0045895	regulation of protein kinase activity	MF → BP
GO:0015491	cation:cation antiporter activity	GO:0015707	nitrite transport	MF → BP
GO:0043091	L-arginine import	GO:0051139	metal ion:hydrogen antiporter activity	BP → MF
GO:0002286	T cell activation involved in immune response	GO:0043231	intracellular membrane-bounded organelle	BP → CC
GO:0015491	cation:cation antiporter activity	GO:0045859	regulation of protein kinase activity	MF → BP
GO:0016459	myosin complex	GO:0003774	motor activity	CC → MF