Skip to main content
. 2012 Oct 12;7(10):e47037. doi: 10.1371/journal.pone.0047037

Table 2. Primer classification, polymorphism screening in parents, and amplification in DH population.

Classificationa Primers prefixb Typec No.d Polymorphisme Amplificationf Markersg
BN SSR 24 2 1 2
BnEMS, BnGMS, BoGMS, BrGMS SSR 678 112 66 74
BRAS, CB SSR 310 40 21 24
CNU SSR 187 58 27 32
EJU,ENA SSR 25 5 3 3
FITO SSR 231 26 15 16
Public IGF SSR 95 11 4 4
MR SSR 23 5 2 3
Na,Ni,Ol,Ra SSR 398 59 30 34
Niab SSR 144 48 22 24
sN, sR, sS SSR 129 34 15 18
Subtotal 2244 400 206 234
BrSF SSR 893 213 81 104
BrBAC, P SSR 378 91 53 63
BoSF, SF SSR 2422 289 169 181
Genome Snap SNP 2086 101 40 40
Pr SNP 71 9 5 5
Ns SNP 94 15 3 3
Subtotal 5944 718 351 396
GSSR SSR 180 41 34 35
GIFLP IFLP 107 11 8 9
Gene GSNP SNP 42 10 6 6
Gindel,GTFzip INDEL 114 11 8 9
Subtotal 443 73 56 59
Total 8631 1191 613 689
a

Primer classifications: Public indicates publicly available primers, Genome indicates newly developed genome-sourced primers, Gene indicates newly developed primers related to oil-content genes.

b

Prefix for each primer when it was designed.

c

Primer type based on its design.

d

Total number of primers.

e

Total number of polymorphic primers screened in parents zy036 and 51070.

f

Total number of polymorphisms amplified by primers in DH population.

g

Total number of molecular markers used to construct genetic linkage map in DH population.