Table 1.
Molecule | Δx‡Unfolding (nm)∗ | Δx‡Folding (nm)∗ | ΔxTotal (sum) (nm)∗ | ΔxTotal (measured) (nm)† | Ratio of ΔxTotal‡ | ln(kCoincident)∗ |
---|---|---|---|---|---|---|
Constant-force feedback (partition method, 100 Hz) | ||||||
DNA hairpin | 11.3 ± 0.6 | 12.1 ± 1.1 | 23.5 ± 1.6 | 17.7 ± 0.4 | 1.33 | 1.3 ± 0.4 |
RNA hairpin | 12.1 ± 2.5 | 13.9 ± 2.6 | 26.0 ± 3.2 | 19.2 ± 0.4 | 1.35 | 0.9 ± 0.4 |
Protein | 14.8 ± 8.1 | 22.4 ± 6.4 | 37.2 ± 5.6 | 18.9 ± 0.4 | 1.97 | 2.0 ± 0.6 |
Constant-trap position (partition method, 100 Hz) | ||||||
DNA hairpin | 9.3 ± 1.4 | 10.9 ± 1.8 | 20.2 ± 1.5 | 17.7 ± 0.4 | 1.14 | 1.3 ± 0.6 |
RNA hairpin | 8.9 ± 5.6 | 13.2 ± 3.6 | 22.1 ± 6.6 | 19.2 ± 0.4 | 1.15 | 0.9 ± 0.9 |
Protein | 7.5 ± 3.1 | 15.9 ± 5.1 | 23.4 ± 6.0 | 18.9 ± 0.4 | 1.24 | 2.4 ± 0.7 |
Constant-trap position (BHMM method, 1000 Hz) | ||||||
DNA hairpin | 7.8 ± 0.7 | 10.2 ± 0.9 | 18.0 ± 1.3 | 17.7 ± 0.4 | 1.02 | 1.7 ± 0.5 |
RNA hairpin | 7.9 ± 1.9 | 11.6 ± 2.1 | 19.5 ± 3.1 | 19.2 ± 0.4 | 1.02 | 1.5 ± 0.7 |
Protein | 6.1 ± 1.1 | 14.4 ± 3.9 | 20.5 ± 3.2 | 18.9 ± 0.4 | 1.09 | 2.8 ± 0.7 |
Average values reported with a 95% CI.
Distance determined from fitting a histogram of the trap position from a constant-force-feedback experiment with two Gaussian distributions and determining the difference between the two Gaussian means with a 95% CI.
Ratio of the calculated sum of the distances to the transition state to the experimentally measured distance between the two states.