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. 2012 Oct 15;7(10):e47454. doi: 10.1371/journal.pone.0047454

Table 2. SNPs in miRNA genes in 8q24.2 and 11q13.3 genotyped in SNP500 and HapMap samples.

miRNA SNP Allelea CAUb AFAMc HISd PARIe Hap CEU Hap CHB+JPT Hap YRI
8q24.2
miR-939 novelf C/T 0 0.02 0 0 0 0 0
miR-1206 rs2114358 G/A 0.41 0.22 0.26 0.45 0.42 0.34 0.22
miR-1208 rs56863230 G/C 0 0 0 0 0 0.6 0
miR-1208 rs2648841 G/T/A 0.97 0.67 0.83 0.38 0.94 0.56 0.84
rs2648841 G/T/A 0.03 0.10 0.15 0.56 0.05 0.08 0.08
rs2648841 G/T/A 0 0.23 0.02 0.06 0.01 0.08 0.08
miR-3686 rs6997249 G/A 0.27 0.1 0.2 0.15 N.A. N.A. N.A.
miR-4772-1 rs28655823 G/C 0.11 0.46 0.13 0.13 N.A. N.A. N.A.
miR-4664 rs6981062 A/G 0 0.04 0.02 0 N.A. N.A. N.A.
miR-5194 rs78360334 T/C 0 0 0 0.04 N.A. N.A. N.A.
11q13.3
miR-326 rs72561778 A/G 0 0.02 0 0 0 0 0
miR-612 rs550894 C/A 0.11 0.10 0.37 0.27 0.06 0.25 0.1
miR-612 rs12803915 G/A 0.24 0.25 0.13 0.15 0.26 0.1 0.08
miR-1237 novelg G/C 0 0.02 0 0 0 0 0
miR-548al rs10437738 A/G 0 0.04 0.04 0 N.A. N.A. N.A.
rs60917039 G/A 0 0.10 0 0 N.A. N.A. N.A.
rs515924 A/G 0.15 0.1 0.1 0.27 N.A. N.A. N.A.
a

allele 1/allele 2; allele frequencies are for underlined alleles. SNP500 samples:

b

Caucasian (n = 31),

c

African American (n = 24),

d

Hispanic (n = 23),

e

Pacific Rim (n = 24); HapMap samples: Hap CEU (n = 90), Hap CHB+JPT (n = 90), Hap YRI (n = 90).

f

miR-939 novel SNP at chr position 145590173;

g

miR-1237 novel SNP at chr position 63892701 (based on hg 18).

N.A. = not assessed.