Table 2. SNPs in miRNA genes in 8q24.2 and 11q13.3 genotyped in SNP500 and HapMap samples.
miRNA | SNP | Allelea | CAUb | AFAMc | HISd | PARIe | Hap CEU | Hap CHB+JPT | Hap YRI |
8q24.2 | |||||||||
miR-939 | novelf | C/T | 0 | 0.02 | 0 | 0 | 0 | 0 | 0 |
miR-1206 | rs2114358 | G/A | 0.41 | 0.22 | 0.26 | 0.45 | 0.42 | 0.34 | 0.22 |
miR-1208 | rs56863230 | G/C | 0 | 0 | 0 | 0 | 0 | 0.6 | 0 |
miR-1208 | rs2648841 | G/T/A | 0.97 | 0.67 | 0.83 | 0.38 | 0.94 | 0.56 | 0.84 |
rs2648841 | G/T/A | 0.03 | 0.10 | 0.15 | 0.56 | 0.05 | 0.08 | 0.08 | |
rs2648841 | G/T/A | 0 | 0.23 | 0.02 | 0.06 | 0.01 | 0.08 | 0.08 | |
miR-3686 | rs6997249 | G/A | 0.27 | 0.1 | 0.2 | 0.15 | N.A. | N.A. | N.A. |
miR-4772-1 | rs28655823 | G/C | 0.11 | 0.46 | 0.13 | 0.13 | N.A. | N.A. | N.A. |
miR-4664 | rs6981062 | A/G | 0 | 0.04 | 0.02 | 0 | N.A. | N.A. | N.A. |
miR-5194 | rs78360334 | T/C | 0 | 0 | 0 | 0.04 | N.A. | N.A. | N.A. |
11q13.3 | |||||||||
miR-326 | rs72561778 | A/G | 0 | 0.02 | 0 | 0 | 0 | 0 | 0 |
miR-612 | rs550894 | C/A | 0.11 | 0.10 | 0.37 | 0.27 | 0.06 | 0.25 | 0.1 |
miR-612 | rs12803915 | G/A | 0.24 | 0.25 | 0.13 | 0.15 | 0.26 | 0.1 | 0.08 |
miR-1237 | novelg | G/C | 0 | 0.02 | 0 | 0 | 0 | 0 | 0 |
miR-548al | rs10437738 | A/G | 0 | 0.04 | 0.04 | 0 | N.A. | N.A. | N.A. |
rs60917039 | G/A | 0 | 0.10 | 0 | 0 | N.A. | N.A. | N.A. | |
rs515924 | A/G | 0.15 | 0.1 | 0.1 | 0.27 | N.A. | N.A. | N.A. |
allele 1/allele 2; allele frequencies are for underlined alleles. SNP500 samples:
Caucasian (n = 31),
African American (n = 24),
Hispanic (n = 23),
Pacific Rim (n = 24); HapMap samples: Hap CEU (n = 90), Hap CHB+JPT (n = 90), Hap YRI (n = 90).
miR-939 novel SNP at chr position 145590173;
miR-1237 novel SNP at chr position 63892701 (based on hg 18).
N.A. = not assessed.