Table 4. Tagged SNPs with the most associated p-values for each MMP gene using spherical equivalent (SE), axial length (AL), anterior chamber depth (ACD) and corneal curvature (CC) as the traits.
Gene | Trait | SNP | Minor Allele | HWE | P* | OR | 95% CI | |
Name | Freq. | |||||||
MMP1 | SE | rs470747 | G | 0.36 | 0.93 | 0.10 | 1.40 | 0.93–2.10 |
AL | rs10488 | A | 0.06 | 0.46 | 0.28 | 0.81 | 0.55–1.19 | |
ACD | rs498186 | C | 0.43 | 0.59 | 0.01 | 0.94 | 0.90–0.99 | |
CC | rs10488 | A | 0.06 | 0.46 | 0.02 | 2.40 | 1.17–4.92 | |
MMP2 | SE | rs11541998 | C | 0.11 | 0.13 | 0.17 | 1.52 | 0.83–2.77 |
AL | rs11541998 | C | 0.11 | 0.13 | 0.25 | 0.83 | 0.61–1.13 | |
ACD | rs11541998 | C | 0.11 | 0.13 | 0.17 | 1.06 | 0.98–1.14 | |
CC | rs1053605 | A | 0.07 | 0.35 | 0.07 | 1.85 | 0.94–3.64 | |
MMP3 | SE | rs522616 | G | 0.21 | 0.19 | 0.37 | 1.23 | 0.78–1.96 |
AL | rs522616 | G | 0.21 | 0.19 | 0.35 | 0.90 | 0.72–1.12 | |
ACD | rs3020919 | A | 0.24 | 0.29 | 0.15 | 0.96 | 0.91–1.02 | |
CC | rs3020919 | A | 0.24 | 0.29 | 0.51 | 1.15 | 0.75–1.76 | |
MMP8 | SE | rs3740938 | A | 0.08 | 1.00 | 0.02 | 0.42 | 0.20–0.85 |
AL | rs11225395 | A | 0.46 | 0.93 | 0.01 | 1.28 | 1.05–1.54 | |
ACD | rs12284255 | A | 0.07 | 0.52 | 0.08 | 0.93 | 0.85–1.01 | |
CC | rs11225395 | A | 0.46 | 0.93 | 0.09 | 0.73 | 0.51–1.05 | |
MMP9 | SE | rs3918253 | G | 0.45 | 0.43 | 0.23 | 0.79 | 0.54–1.16 |
AL | rs2274755 | A | 0.17 | 0.54 | 0.18 | 1.14 | 0.94–1.37 | |
ACD | rs3918253 | G | 0.45 | 0.43 | 0.43 | 0.97 | 0.91–1.04 | |
CC | rs3918253 | G | 0.45 | 0.43 | 0.30 | 0.83 | 0.58–1.18 | |
MMP10 | SE | rs470154 | A | 0.06 | 0.40 | 0.31 | 0.64 | 0.27–1.52 |
AL | rs486055 | A | 0.15 | 0.87 | 0.06 | 1.29 | 0.99–1.69 | |
ACD | rs7948454 | G | 0.08 | 0.02 | 0.09 | 1.07 | 0.99–1.16 | |
CC | rs17099562 | A | 0.05 | 0.39 | 0.06 | 2.17 | 0.98–4.83 | |
MMP11 | SE | rs131451 | G | 0.12 | 0.29 | 0.02 | 0.50 | 0.28–0.90 |
AL | rs738791 | A | 0.49 | 0.93 | 0.15 | 1.15 | 0.95–1.40 | |
ACD | rs738791 | A | 0.49 | 0.93 | 0.10 | 1.04 | 0.99–1.09 | |
CC | rs738792 | G | 0.11 | 0.51 | 0.31 | 0.75 | 0.43–1.30 | |
MMP13 | SE | rs478927 | A | 0.33 | 0.77 | 0.40 | 0.84 | 0.56–1.26 |
AL | rs10502009 | G | 0.11 | 1.00 | 0.19 | 0.82 | 0.61–1.10 | |
ACD | rs3758854 | A | 0.07 | 0.01 | 0.29 | 1.05 | 0.96–1.15 | |
CC | rs10502009 | G | 0.11 | 1.00 | 0.21 | 1.42 | 0.82–2.48 |
Unadjusted P-values with a significance threshold of 0.05/50 = 0.001.