Table 1.

Summary of sequence reads generated in this study

condition	sample	read length in bases	no. of reads	no. of reads mappedto reference genome	% of reads mappedto reference genome
vegetative mycelium1	SM1	40	19,709,656	18,881,235	95.7
	SM6	101	76,664,943	66,365,082	86.5
sexual mycelium2	SM2	35	9,445,238	9,003,807	95.3
	SM7	101	68,217,654	60,021,065	87.9
wild-type protoperithecia3	SM4	101	31,837,927	24,722,821	77.6
	SM5	101	34,225,766	27,430,438	80.1
pro1 protoperithecia3	SM8	100	52,257,489	30,321,586	58.0
	SM9	100	53,996,808	25,265,576	46.8

The total number of reads is the number of reads after cleaning. Each sample represents an independent biological replicate.

¹Equal amounts of RNA from the following growth conditions (independent biological replicates for each growth condition) were pooled: growth on cornmeal medium for 3d, 4d and 5d, growth on defined medium for 3d, 4d, and 5d; all in shaken cultures.

²Equal amounts of RNA from the following growth conditions (independent biological replicates for each growth condition) were pooled: growth on cornmeal medium for 3d, 4d and 5d, growth on defined medium for 3d, 4d, and 5d; all in surface cultures.

³Laser microdissected samples.